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(-) Description

Title :  BIOGENIC AMINE-BINDING PROTEIN SELENOMETHIONINE DERIVATIVE
 
Authors :  J. F. Andersen, X. Xu, B. Chang, B. J. Mans, J. M. Ribeiro
Date :  05 Oct 12  (Deposition) - 02 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,I,J,K,L
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  I  (1x)
Biol. Unit 6:  J  (1x)
Biol. Unit 7:  K  (1x)
Biol. Unit 8:  L  (1x)
Keywords :  Beta Barrel, Serotonin, Norepinephrine, Salivary Gland, Amine-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Xu, B. W. Chang, B. J. Mans, J. M. Ribeiro, J. F. Andersen
Structure And Ligand-Binding Properties Of The Biogenic Amine-Binding Protein From The Saliva Of A Blood-Feeding Insect Vector Of Trypanosoma Cruzi.
Acta Crystallogr. , Sect. D V. 69 105 2013
PubMed-ID: 23275168  |  Reference-DOI: 10.1107/S0907444912043326

(-) Compounds

Molecule 1 - BIOGENIC AMINE-BINDING PROTEIN
    Chains: A, B, C, D, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET17B
    Expression System Strain: B834(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: TRIATOMID BUG
    Organism Scientific: RHODNIUS PROLIXUS
    Organism Taxid: 13249

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDIJKL
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     I   
Biological Unit 6 (1x):      J  
Biological Unit 7 (1x):       K 
Biological Unit 8 (1x):        L

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4HFO)

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:4 -A:125
2A:42 -A:176
3B:4 -B:125
4B:42 -B:176
5C:4 -C:125
6C:42 -C:176
7D:4 -D:125
8D:42 -D:176
9I:4 -I:125
10I:42 -I:176
11J:4 -J:125
12J:42 -J:176
13K:4 -K:125
14K:42 -K:176
15L:4 -L:125
16L:42 -L:176

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HFO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HFO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HFO)

(-) Exons   (0, 0)

(no "Exon" information available for 4HFO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains d4hfoa_ A: automated matches                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhh..hhhhhee.hhhhhhh..hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfo A   2 SGCSTVDTVKDFNKDNFFTGSWYmTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYmYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYEK 196
                                    11        21   |    31        41        51        61        71        81        91       101       111       121       131  |    141       151       161       171       181       191     
                                                  25-MSE                                                                                                      134-MSE                                                          


Chain B from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains d4hfob_ B: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeee.......eeeeeee.....hhhhhhhhhhhhhhh..hhhhhee.hhhhhhh..hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfo B   2 SGCSTVDTVKDFNKDNFFTGSWYmTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYmYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYE 195
                                    11        21   |    31        41        51        61        71        81        91       101       111       121       131  |    141       151       161       171       181       191    
                                                  25-MSE                                                                                                      134-MSE                                                         


Chain C from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains d4hfoc_ C: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeee.......eeeeeee.....hhhhhhhhhhhhhh...hhhhhee.hhhhhhh..hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfo C   4 CSTVDTVKDFNKDNFFTGSWYmTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYmYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYEK 196
                                    13        23 |      33        43        53        63        73        83        93       103       113       123       133|      143       153       163       173       183       193   
                                                25-MSE                                                                                                      134-MSE                                                          


Chain D from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains d4hfod_ D: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeee...hhhh.eeeeee.....hhhhhhhhhhhhhh...hhhhhee.hhhhhhh..hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfo D   2 SGCSTVDTVKDFNKDNFFTGSWYmTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYmYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYE 195
                                    11        21   |    31        41        51        61        71        81        91       101       111       121       131  |    141       151       161       171       181       191    
                                                  25-MSE                                                                                                      134-MSE                                                         


Chain I from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains d4hfoi_ I: automated matches                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhh..hhhhhee.hhhhhhh..hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfo I   2 SGCSTVDTVKDFNKDNFFTGSWYmTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYmYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYEK 196
                                    11        21   |    31        41        51        61        71        81        91       101       111       121       131  |    141       151       161       171       181       191     
                                                  25-MSE                                                                                                      134-MSE                                                          


Chain J from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains d4hfoj_ J: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeee.......eeeeeee.....hhhhhhhhhhhhhhh..hhhhhee.hhhhhhh..hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfo J   2 SGCSTVDTVKDFNKDNFFTGSWYmTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYmYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYE 195
                                    11        21   |    31        41        51        61        71        81        91       101       111       121       131  |    141       151       161       171       181       191    
                                                  25-MSE                                                                                                      134-MSE                                                         


Chain K from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains d4hfok_ K: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeee.......eeeeeee.....hhhhhhhhhhhhhh...hhhhhee.hhhhhhh..hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfo K   4 CSTVDTVKDFNKDNFFTGSWYmTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYmYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYEK 196
                                    13        23 |      33        43        53        63        73        83        93       103       113       123       133|      143       153       163       173       183       193   
                                                25-MSE                                                                                                      134-MSE                                                          


Chain L from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains d4hfol_ L: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeee...hhhh.eeeeee.....hhhhhhhhhhhhhh...hhhhhee.hhhhhhh..hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfo L   2 SGCSTVDTVKDFNKDNFFTGSWYmTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYmYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYE 195
                                    11        21   |    31        41        51        61        71        81        91       101       111       121       131  |    141       151       161       171       181       191    
                                                  25-MSE                                                                                                      134-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HFO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HFO)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q86PT9_RHOPR | Q86PT9: 4ge1 4get

(-) Related Entries Specified in the PDB File

4ge1 BIOGENIC AMINE BINDING PROTEIN TRYPTAMINE COMPLEX
4get BIOGENIC AMINE BINDING PROTEIN