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(-) Description

Title :  CRYSTAL STRUCTURE OF BIOGENIC AMINE BINDING PROTEIN FROM RHODNIUS PROLIXUS
 
Authors :  J. F. Andersen, B. W. Chang, X. Xu, B. J. Mans, J. M. Ribeiro
Date :  02 Aug 12  (Deposition) - 02 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.24
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Lipocalin, Serotonin, Norepinephrine, Amine-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Xu, B. W. Chang, B. J. Mans, J. M. Ribeiro, J. F. Andersen
Structure And Ligand-Binding Properties Of The Biogenic Amine-Binding Protein From The Saliva Of A Blood-Feeding Insect Vector Of Trypanosoma Cruzi.
Acta Crystallogr. , Sect. D V. 69 105 2013
PubMed-ID: 23275168  |  Reference-DOI: 10.1107/S0907444912043326

(-) Compounds

Molecule 1 - BIOGENIC AMINE-BINDING PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET17B
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: TRIATOMID BUG
    Organism Scientific: RHODNIUS PROLIXUS
    Organism Taxid: 13249

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1TRS4Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:59 , ASP A:72 , ASN A:92 , ARG A:105 , LEU A:107 , TYR A:132 , LEU A:134 , HOH A:340 , HOH A:357 , HOH A:371 , HOH A:380BINDING SITE FOR RESIDUE TRS A 201
2AC2SOFTWAREILE B:25 , PHE B:59 , ASP B:72 , ARG B:105 , LEU B:107 , VAL B:124 , TYR B:132 , LEU B:134BINDING SITE FOR RESIDUE TRS B 201
3AC3SOFTWAREILE C:25 , PHE C:59 , ASP C:72 , ARG C:105 , LEU C:107 , TYR C:132 , LEU C:134 , HOH C:337 , HOH C:356BINDING SITE FOR RESIDUE TRS C 201
4AC4SOFTWAREILE D:25 , PHE D:59 , ASP D:72 , ARG D:105 , LEU D:107 , LEU D:134 , HOH D:379BINDING SITE FOR RESIDUE TRS D 201

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:4 -A:125
2A:42 -A:176
3B:4 -B:125
4B:42 -B:176
5C:4 -C:125
6C:42 -C:176
7D:4 -D:125
8D:42 -D:176

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GET)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GET)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GET)

(-) Exons   (0, 0)

(no "Exon" information available for 4GET)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains d4geta_ A: automated matches                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhh..hhhhhee.hhhhhhh..hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4get A   2 SGCSTVDTVKDFNKDNFFTGSWYITHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYLYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYEK 196
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191     


Chain B from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains d4getb_ B: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeee.......eeeeeee.....hhhhhhhhhhhhhhh..hhhhhee.hhhhhhh..hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4get B   2 SGCSTVDTVKDFNKDNFFTGSWYITHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYLYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYE 195
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    


Chain C from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains d4getc_ C: automated matches                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeee.......eeeeeee.....hhhhhhhhhhhhhh...hhhhhee.hhhhhhh..hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4get C   4 CSTVDTVKDFNKDNFFTGSWYITHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYLYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYEK 196
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193   


Chain D from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains d4getd_ D: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..eeeeeeeee.....hhhhh.eeeeeeee....eeeeeeeeee....eeeeeeeeee.hhh.....eeeeeeeee.....eeeeeeeeeeeeee....eeeeeee...hhhh.eeeeee.....hhhhhhhhhhhhhh...hhhhhee.hhhhhhh..hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4get D   2 SGCSTVDTVKDFNKDNFFTGSWYITHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNVIVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYYLYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDDETLQKLLKQSFPNYE 195
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GET)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GET)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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        Q86PT9_RHOPR | Q86PT9: 4ge1 4hfo

(-) Related Entries Specified in the PDB File

4ge1