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(-) Description

Title :  CRYSTAL STRUCTURE OF ABFR OF STAPHYLOCOCCUS EPIDERMIDIS
 
Authors :  X. Liu, X. Sun, J. Gan, L. Lan, C. -G. Yang
Date :  28 Sep 12  (Deposition) - 02 Jan 13  (Release) - 27 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Hth, Transcription Factor, Dna Binding, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Liu, X. Sun, Y. Wu, C. Xie, W. Zhang, D. Wang, X. Chen, D. Qu, J. Gan, H. Chen, H. Jiang, L. Lan, C. G. Yang
Oxidation-Sensing Regulator Abfr Regulates Oxidative Stress Responses, Bacterial Aggregation, And Biofilm Formation In Staphylococcus Epidermidis.
J. Biol. Chem. V. 288 3739 2013
PubMed-ID: 23271738  |  Reference-DOI: 10.1074/JBC.M112.426205

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, MARR FAMILY
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SERP2196
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS EPIDERMIDIS
    Organism Taxid: 176279
    Strain: ATCC 35984 / RP62A

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4HBL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HBL)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asn A:51 -Pro A:52
2Asn B:51 -Pro B:52
3Asn C:51 -Pro C:52
4Asn D:51 -Pro D:52

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HBL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HBL)

(-) Exons   (0, 0)

(no "Exon" information available for 4HBL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains d4hbla_ A: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhhh.ee..eeee.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hbl A  -1 NAmKQEQmRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVmLTLWEENPQTLNSIGRHLDLSSNTLTPmLKRLEQSGWVKRLIITLTDNGQQQQEAVFEAISSCLPQEFDTTEYDETKYVFEELEQTLKHLIE 145
                              |    | 8        18        28        38     |  48        58        68   |    78     || 97       107       117       127       137        
                              |    |                                    44-MSE                      72-MSE      84|                                                   
                              1-MSE|                                                                             94                                                   
                                   6-MSE                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4hblb_ B: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eeee....eeeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hbl B  -1 NAmKQEQmRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVmLTLWEENPQTLNSIGRHLDLSSNTLTPmLKRLEQSGWVKRERQQLIITLTDNGQQQQEAVFEAISSCLPQEFDTTEYDETKYVFEELEQTLKHLI 144
                              |    | 8        18        28        38     |  48        58        68   |    78        93       103       113       123       133       143 
                              1-MSE|                                    44-MSE                      72-MSE         87|                                                   
                                   6-MSE                                                                            93                                                   


Chain C from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d4hblc_ C: automated matches                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..eehhhhhhhh..hhhhhhhhhhhhhhh..eeee....eeeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hbl C  -1 NAmKQEQmRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVmLTLWEENPQTLNSIGRHLDLSSNTLTPmLKRLEQSGWVKRERQQLIITLTDNGQQQQEAVFEAISSCLPQEFDTTEYDETKYVFEELEQTLKHLIE 145
                              |    | 8        18        28        38     |  48        58        68   |    78        93       103       113       123       133       143  
                              1-MSE|                                    44-MSE                      72-MSE         87|                                                    
                                   6-MSE                                                                            93                                                    


Chain D from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains d4hbld_ D: automated matches                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eeee.........eeeehhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hbl D   0 AmKQEQmRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVmLTLWEENPQTLNSIGRHLDLSSNTLTPmLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLPQEFDTTEYDETKYVFEELEQTLKHLIEK 146
                             |    |  9        19        29        39    |   49        59        69  |     79        89        99       109       119       129       139       
                             1-MSE|                                    44-MSE                      72-MSE                                                                      
                                  6-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HBL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HBL)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5HKZ1_STAEQ | Q5HKZ1: 5hlg 5hlh 5hli

(-) Related Entries Specified in the PDB File

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