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(-) Description

Title :  MUTANT STRUCTURE OF LAMININ-BINDING ADHESIN (LMB) FROM STREPTOCOCCUS AGALACTIAE
 
Authors :  P. Karthe, R. Preethi
Date :  08 Sep 12  (Deposition) - 04 Sep 13  (Release) - 29 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Adhesin, Human Laminin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Ragunathan, D. Sridaran, A. Weigel, S. Shabayek, B. Spellerberg, K. Ponnuraj
Metal Binding Is Critical For The Folding And Function Of Laminin Binding Protein, Lmb Of Streptococcus Agalactiae.
Plos One V. 8 67517 2013
PubMed-ID: 23826314  |  Reference-DOI: 10.1371/JOURNAL.PONE.0067517

(-) Compounds

Molecule 1 - LAMININ-BINDING SURFACE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PET-21A
    Fragment: UNP RESIDUES 32-306
    Gene: LMB, SAG1234
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS AGALACTIAE
    Organism Taxid: 208435
    Strain: ATCC BAA-611 / 2603 V/R

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:66 , HIS B:142 , HIS B:206 , ILE B:226 , GLU B:281BINDING SITE FOR RESIDUE ZN B 401
2AC2SOFTWAREHIS A:66 , HIS A:142 , HIS A:206 , ILE A:226 , GLU A:281BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H0F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4H0F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H0F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H0F)

(-) Exons   (0, 0)

(no "Exon" information available for 4H0F)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains d4h0fa_ A: automated matches                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhh...eeeeee...hhhhh..hhhhhhhhhhh.eeee.....hhhhhhhhhhhhh...eeee.......................hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhh..eeeeee........hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhh..eeee............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4h0f A  32 GMSVVTSFYPMYAMTKEVSGDLNDVRMIQSGAGIHSFEPSVNDVAAIYDADLFVYHSHTLEAWARDLDPNLKKSKVNVFEASKPLTLDRVKPGATVYDPHTWTDPVLAGEEAVNIAKELGHLDPKHKDSYTKKAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSPLEAAPSGNKTYLENLRANLEVLYQQLK 306
                                    41        51        61        71        81        91       101       111       121  ||   142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302    
                                                                                                                      124|                                                                                                                                                                          
                                                                                                                       136                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains d4h0fb_ B: automated matches                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhh...eeeeee..........hhhhhhhhhh..eeee.....hhhhhhhhhhhhh...eeee.......................hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhh..eeeeee........hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhh..eeee............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4h0f B  32 GMSVVTSFYPMYAMTKEVSGDLNDVRMIQSGAGIHSFEPSVNDVAAIYDADLFVYHSHTLEAWARDLDPNLKKSKVNVFEASKPLTLDRVKPGATVYDPHTWTDPVLAGEEAVNIAKELGHLDPKHKDSYTKKAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSPLEAAPSGNKTYLENLRANLEVLYQQLK 306
                                    41        51        61        71        81        91       101       111       121  ||   142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302    
                                                                                                                      124|                                                                                                                                                                          
                                                                                                                       136
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H0F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H0F)

(-) Gene Ontology  (4, 4)

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3hjt