Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  N2 NEURAMINIDASE D151G MUTANT OF A/TANZANIA/205/2010 H3N2 IN COMPLEX WITH HUMAN SIALIC ACID RECEPTOR
 
Authors :  X. Zhu, I. A. Wilson
Date :  06 Sep 12  (Deposition) - 17 Oct 12  (Release) - 05 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Beta-Propeller, Influenza Virus, Neuraminidase, Hemagglutinin, Hemadsorption, Viral Infection, Sialic Acid Receptor, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Zhu, R. Mcbride, C. M. Nycholat, W. Yu, J. C. Paulson, I. A. Wilson
Influenza Virus Neuraminidases With Reduced Enzymatic Activity That Avidly Bind Sialic Acid Receptors.
J. Virol. V. 86 13371 2012
PubMed-ID: 23015718  |  Reference-DOI: 10.1128/JVI.01426-12

(-) Compounds

Molecule 1 - NEURAMINIDASE
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System PlasmidPFASTBACHT-A
    Expression System Taxid7111
    Expression System Vector TypePLASMID
    FragmentECTODOMAIN
    Organism ScientificINFLUENZA A VIRUS
    Organism Taxid119210
    StrainA/TANZANIA/205/2010(H3N2)

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 46)

Asymmetric/Biological Unit (8, 46)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2CA5Ligand/IonCALCIUM ION
3FUC1Ligand/IonALPHA-L-FUCOSE
4FUL1Ligand/IonBETA-L-FUCOSE
5GAL2Ligand/IonBETA-D-GALACTOSE
6MAN8Ligand/IonALPHA-D-MANNOSE
7NAG21Ligand/IonN-ACETYL-D-GLUCOSAMINE
8SIA4Ligand/IonO-SIALIC ACID

(-) Sites  (46, 46)

Asymmetric Unit (46, 46)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:118 , GLU A:119 , ARG A:152 , ARG A:224 , ALA A:246 , GLU A:276 , GLU A:277 , ARG A:292 , ARG A:371 , TYR A:406 , GAL A:802BINDING SITE FOR RESIDUE SIA A 801
02AC2SOFTWARESIA A:801BINDING SITE FOR RESIDUE GAL A 802
03AC3SOFTWAREASN A:200 , NAG A:804 , TYR B:453 , GLY B:454 , THR B:455BINDING SITE FOR RESIDUE NAG A 803
04AC4SOFTWARENAG A:803 , BMA A:805 , MAN A:806 , HOH A:977 , HOH A:1047 , ASN B:393 , ARG B:394BINDING SITE FOR RESIDUE NAG A 804
05AC5SOFTWARENAG A:804 , MAN A:806 , MAN A:807 , GLN B:391 , ILE B:392 , ARG B:394BINDING SITE FOR RESIDUE BMA A 805
06AC6SOFTWARENAG A:804 , BMA A:805 , HOH A:934 , HOH A:1035 , ASP B:330 , GLN B:391BINDING SITE FOR RESIDUE MAN A 806
07AC7SOFTWAREBMA A:805 , HOH A:953 , HOH A:964 , HOH A:1026BINDING SITE FOR RESIDUE MAN A 807
08AC8SOFTWAREASN A:329 , SER A:331 , SER A:332 , HOH A:907 , HOH A:990BINDING SITE FOR RESIDUE NAG A 808
09AC9SOFTWAREASN A:146 , ASN A:147 , LEU A:437BINDING SITE FOR RESIDUE NAG A 809
10BC1SOFTWAREASN A:367 , GLU A:368 , HOH A:1040BINDING SITE FOR RESIDUE NAG A 810
11BC2SOFTWAREHOH A:950BINDING SITE FOR RESIDUE CA A 811
12BC3SOFTWAREASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , HIS A:347BINDING SITE FOR RESIDUE CA A 812
13BC4SOFTWAREARG B:118 , GLU B:119 , ARG B:152 , ARG B:224 , ALA B:246 , GLU B:276 , GLU B:277 , ARG B:292 , ASN B:294 , HIS B:347 , ARG B:371 , TYR B:406 , GAL B:802 , HOH B:920BINDING SITE FOR RESIDUE SIA B 801
14BC5SOFTWARESIA B:801 , HOH B:952BINDING SITE FOR RESIDUE GAL B 802
15BC6SOFTWAREASN B:200 , NAG B:804 , HOH B:947 , TYR C:453 , GLY C:454 , THR C:455BINDING SITE FOR RESIDUE NAG B 803
16BC7SOFTWARENAG B:803 , BMA B:805 , HOH B:1005 , ASN C:393 , ARG C:394BINDING SITE FOR RESIDUE NAG B 804
17BC8SOFTWARENAG B:804 , MAN B:806 , MAN B:807 , GLN C:391 , ASN C:393 , ARG C:394BINDING SITE FOR RESIDUE BMA B 805
18BC9SOFTWAREBMA B:805 , HOH B:928 , HOH B:1005 , GLN C:391BINDING SITE FOR RESIDUE MAN B 806
19CC1SOFTWAREBMA B:805 , HOH B:948 , HOH B:977BINDING SITE FOR RESIDUE MAN B 807
20CC2SOFTWAREASN B:329 , SER B:331 , SER B:332 , HOH B:907BINDING SITE FOR RESIDUE NAG B 808
21CC3SOFTWAREASN B:146 , ASN B:147 , HOH B:927BINDING SITE FOR RESIDUE NAG B 809
22CC4SOFTWAREASN B:367 , GLU B:368 , SER B:370 , HOH B:960BINDING SITE FOR RESIDUE NAG B 810
23CC5SOFTWAREASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , GLY B:346 , HIS B:347BINDING SITE FOR RESIDUE CA B 811
24CC6SOFTWAREARG C:118 , GLU C:119 , ARG C:152 , ARG C:224 , ALA C:246 , GLU C:276 , GLU C:277 , ARG C:292 , ARG C:371 , TYR C:406 , HOH C:906 , HOH C:970BINDING SITE FOR RESIDUE SIA C 801
25CC7SOFTWAREASN C:200 , NAG C:803 , TYR D:453 , GLY D:454 , THR D:455BINDING SITE FOR RESIDUE NAG C 802
26CC8SOFTWARENAG C:802 , BMA C:804 , HOH C:960 , HOH C:966 , ASN D:393 , ARG D:394BINDING SITE FOR RESIDUE NAG C 803
27CC9SOFTWARENAG C:803 , MAN C:805 , MAN C:806 , GLN D:391 , ARG D:394BINDING SITE FOR RESIDUE BMA C 804
28DC1SOFTWAREBMA C:804 , HOH C:936 , HOH C:948 , HOH C:980 , ASP D:330 , GLN D:391BINDING SITE FOR RESIDUE MAN C 805
29DC2SOFTWAREBMA C:804 , ILE D:392BINDING SITE FOR RESIDUE MAN C 806
30DC3SOFTWAREASN C:146 , ASN C:147 , LEU C:437 , NAG C:808 , FUC C:809 , HOH C:969BINDING SITE FOR RESIDUE NAG C 807
31DC4SOFTWARENAG C:807 , FUC C:809 , HOH C:965BINDING SITE FOR RESIDUE NAG C 808
32DC5SOFTWAREASN C:147 , ARG C:150 , NAG C:807 , NAG C:808BINDING SITE FOR RESIDUE FUC C 809
33DC6SOFTWAREASN C:86 , ASN C:234 , TYR C:284 , HOH C:949 , HOH C:968BINDING SITE FOR RESIDUE NAG C 810
34DC7SOFTWAREASN C:367 , SER C:370 , ARG C:400BINDING SITE FOR RESIDUE NAG C 811
35DC8SOFTWAREASP C:293 , GLY C:297 , ASP C:324 , GLY C:345 , HIS C:347BINDING SITE FOR RESIDUE CA C 812
36DC9SOFTWAREARG D:118 , GLU D:119 , ARG D:152 , ARG D:224 , ALA D:246 , GLU D:276 , GLU D:277 , ARG D:292 , ARG D:371 , TYR D:406 , HOH D:928 , HOH D:983BINDING SITE FOR RESIDUE SIA D 801
37EC1SOFTWARETYR A:453 , GLY A:454 , THR A:455 , HOH A:993 , ASN D:200 , NAG D:803 , HOH D:1010BINDING SITE FOR RESIDUE NAG D 802
38EC2SOFTWAREASN A:393 , ARG A:394 , NAG D:802 , BMA D:804BINDING SITE FOR RESIDUE NAG D 803
39EC3SOFTWAREGLN A:391 , ARG A:394 , NAG D:803 , MAN D:805 , MAN D:806BINDING SITE FOR RESIDUE BMA D 804
40EC4SOFTWAREGLN A:391 , BMA D:804 , HOH D:965BINDING SITE FOR RESIDUE MAN D 805
41EC5SOFTWAREBMA D:804 , HOH D:1018BINDING SITE FOR RESIDUE MAN D 806
42EC6SOFTWAREASN D:329 , SER D:331 , SER D:332 , HOH D:971 , HOH D:989BINDING SITE FOR RESIDUE NAG D 807
43EC7SOFTWAREASN D:146 , ASN D:147 , FUL D:809 , HOH D:942BINDING SITE FOR RESIDUE NAG D 808
44EC8SOFTWARENAG D:808 , HOH D:942BINDING SITE FOR RESIDUE FUL D 809
45EC9SOFTWAREASN D:367 , GLU D:368 , ARG D:400BINDING SITE FOR RESIDUE NAG D 810
46FC1SOFTWAREASP D:293 , GLY D:297 , ASP D:324 , GLY D:345 , HIS D:347BINDING SITE FOR RESIDUE CA D 811

(-) SS Bonds  (36, 36)

Asymmetric/Biological Unit
No.Residues
1A:92 -A:417
2A:124 -A:129
3A:175 -A:193
4A:183 -A:230
5A:232 -A:237
6A:278 -A:291
7A:280 -A:289
8A:318 -A:337
9A:421 -A:447
10B:92 -B:417
11B:124 -B:129
12B:175 -B:193
13B:183 -B:230
14B:232 -B:237
15B:278 -B:291
16B:280 -B:289
17B:318 -B:337
18B:421 -B:447
19C:92 -C:417
20C:124 -C:129
21C:175 -C:193
22C:183 -C:230
23C:232 -C:237
24C:278 -C:291
25C:280 -C:289
26C:318 -C:337
27C:421 -C:447
28D:92 -D:417
29D:124 -D:129
30D:175 -D:193
31D:183 -D:230
32D:232 -D:237
33D:278 -D:291
34D:280 -D:289
35D:318 -D:337
36D:421 -D:447

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Tyr A:284 -Pro A:285
2Thr A:325 -Pro A:326
3Arg A:430 -Lys A:431
4Tyr B:284 -Pro B:285
5Thr B:325 -Pro B:326
6Arg B:430 -Lys B:431
7Tyr C:284 -Pro C:285
8Thr C:325 -Pro C:326
9Arg C:430 -Lys C:431
10Tyr D:284 -Pro D:285
11Thr D:325 -Pro D:326
12Arg D:430 -Lys D:431

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GZX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GZX)

(-) Exons   (0, 0)

(no "Exon" information available for 4GZX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4gzxa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhh.....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee..........eeee..eeeeee....eeeeeee......eeeeee..eeeeeee..............eee..eeeeeeee.......eeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeee......eeeee....................................eeee..eeeeee.......eeeeeeee...........eeeeeeeeeeeee...eeeeeee....eeeeeeeeeeee.........eeeeeeeeeee.................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzx A  82 AEYRNWSKPQCDITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNVHSNNTVRGRTPYRTLLMNELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCITGDDKNATASFIYNGRLVDSVVSWSKEILRTQESECVCINGTCTVVMTDGSASGKADTKILFIEEGKIVHTSTLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINIKDHSIVSSYVCSGLVGDTPRKNDSSSSSHCLDPNNEEGGHGVKGWAFDDGNDVWMGRTINETSRLGYETFKVIEGWSNPKSKLQINRQVIVDRGNRSGYSGIFSVEGKSCINRCFYVELIRGRKEETEVLWTSNSIVVFCGTSGTYGTGSWPDGADLNLMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        

Chain B from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4gzxb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhh.....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee.........eeeee..eeeeee....eeeeeeeee..eeeeeeee..eeeeeee.......ee.....eee..eeeeeeeee.....eeeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeeee.....eeeee....................................eeee..eeeeee.......eeeeeeeee.........eeeeeeeeeeeeee...eeeeeee....eeeeeeeeeeee.........eeeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzx B  82 AEYRNWSKPQCDITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNVHSNNTVRGRTPYRTLLMNELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCITGDDKNATASFIYNGRLVDSVVSWSKEILRTQESECVCINGTCTVVMTDGSASGKADTKILFIEEGKIVHTSTLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINIKDHSIVSSYVCSGLVGDTPRKNDSSSSSHCLDPNNEEGGHGVKGWAFDDGNDVWMGRTINETSRLGYETFKVIEGWSNPKSKLQINRQVIVDRGNRSGYSGIFSVEGKSCINRCFYVELIRGRKEETEVLWTSNSIVVFCGTSGTYGTGSWPDGADLNLMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        

Chain C from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4gzxc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhh.....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee.........eeeee..eeeeee....eeeeeeeee..eeeeeeee..eeeeeee..............eee..eeeeeeeee.....eeeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeee......eeeee....................................eeee..eeeeee.......eeeeeeee...........eeeeeeeeeeeee...eeeeeee....eeeeeeeeeeee.........eeeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzx C  82 AEYRNWSKPQCDITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNVHSNNTVRGRTPYRTLLMNELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCITGDDKNATASFIYNGRLVDSVVSWSKEILRTQESECVCINGTCTVVMTDGSASGKADTKILFIEEGKIVHTSTLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINIKDHSIVSSYVCSGLVGDTPRKNDSSSSSHCLDPNNEEGGHGVKGWAFDDGNDVWMGRTINETSRLGYETFKVIEGWSNPKSKLQINRQVIVDRGNRSGYSGIFSVEGKSCINRCFYVELIRGRKEETEVLWTSNSIVVFCGTSGTYGTGSWPDGADLNLMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        

Chain D from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4gzxd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhhh....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee.........eeeee..eeeeee....eeeeeee......eeeeee..eeeeeee..............eee..eeeeeeeee.....eeeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeee......eeeee....................................eeee..eeeeee.......eeeeeeeee.........eeeeeeeeeeeeee...eeeeeee....eeeeeeeeeeee.........eeeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzx D  82 AEYRNWSKPQCDITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNVHSNNTVRGRTPYRTLLMNELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCITGDDKNATASFIYNGRLVDSVVSWSKEILRTQESECVCINGTCTVVMTDGSASGKADTKILFIEEGKIVHTSTLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINIKDHSIVSSYVCSGLVGDTPRKNDSSSSSHCLDPNNEEGGHGVKGWAFDDGNDVWMGRTINETSRLGYETFKVIEGWSNPKSKLQINRQVIVDRGNRSGYSGIFSVEGKSCINRCFYVELIRGRKEETEVLWTSNSIVVFCGTSGTYGTGSWPDGADLNLMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GZX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GZX)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BMA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FUC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FUL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GAL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SIA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Arg A:430 - Lys A:431   [ RasMol ]  
    Arg B:430 - Lys B:431   [ RasMol ]  
    Arg C:430 - Lys C:431   [ RasMol ]  
    Arg D:430 - Lys D:431   [ RasMol ]  
    Thr A:325 - Pro A:326   [ RasMol ]  
    Thr B:325 - Pro B:326   [ RasMol ]  
    Thr C:325 - Pro C:326   [ RasMol ]  
    Thr D:325 - Pro D:326   [ RasMol ]  
    Tyr A:284 - Pro A:285   [ RasMol ]  
    Tyr B:284 - Pro B:285   [ RasMol ]  
    Tyr C:284 - Pro C:285   [ RasMol ]  
    Tyr D:284 - Pro D:285   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4gzx
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  K7N5N3_9INFA | K7N5N3
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  K7N5N3_9INFA | K7N5N3
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        K7N5N3_9INFA | K7N5N34gzo 4gzp 4gzq 4gzt 4gzw

(-) Related Entries Specified in the PDB File

4gzo 4gzp 4gzq 4gzs 4gzt 4gzw