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Asym. Unit
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Asym.Unit (274 KB)
Biol.Unit 1 (263 KB)
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(1)
Title
:
N2 NEURAMINIDASE D151G MUTANT OF A/TANZANIA/205/2010 H3N2 IN COMPLEX WITH HUMAN SIALIC ACID RECEPTOR
Authors
:
X. Zhu, I. A. Wilson
Date
:
06 Sep 12 (Deposition) - 17 Oct 12 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta-Propeller, Influenza Virus, Neuraminidase, Hemagglutinin, Hemadsorption, Viral Infection, Sialic Acid Receptor, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, R. Mcbride, C. M. Nycholat, W. Yu, J. C. Paulson, I. A. Wilson
Influenza Virus Neuraminidases With Reduced Enzymatic Activity That Avidly Bind Sialic Acid Receptors.
J. Virol. V. 86 13371 2012
[
close entry info
]
Hetero Components
(8, 46)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
3a: ALPHA-L-FUCOSE (FUCa)
4a: BETA-L-FUCOSE (FULa)
5a: BETA-D-GALACTOSE (GALa)
5b: BETA-D-GALACTOSE (GALb)
6a: ALPHA-D-MANNOSE (MANa)
6b: ALPHA-D-MANNOSE (MANb)
6c: ALPHA-D-MANNOSE (MANc)
6d: ALPHA-D-MANNOSE (MANd)
6e: ALPHA-D-MANNOSE (MANe)
6f: ALPHA-D-MANNOSE (MANf)
6g: ALPHA-D-MANNOSE (MANg)
6h: ALPHA-D-MANNOSE (MANh)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
7p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7q: N-ACETYL-D-GLUCOSAMINE (NAGq)
7r: N-ACETYL-D-GLUCOSAMINE (NAGr)
7s: N-ACETYL-D-GLUCOSAMINE (NAGs)
7t: N-ACETYL-D-GLUCOSAMINE (NAGt)
7u: N-ACETYL-D-GLUCOSAMINE (NAGu)
8a: O-SIALIC ACID (SIAa)
8b: O-SIALIC ACID (SIAb)
8c: O-SIALIC ACID (SIAc)
8d: O-SIALIC ACID (SIAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
5
Ligand/Ion
CALCIUM ION
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
FUL
1
Ligand/Ion
BETA-L-FUCOSE
5
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
6
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
21
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
SIA
4
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(46, 46)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:118 , GLU A:119 , ARG A:152 , ARG A:224 , ALA A:246 , GLU A:276 , GLU A:277 , ARG A:292 , ARG A:371 , TYR A:406 , GAL A:802
BINDING SITE FOR RESIDUE SIA A 801
02
AC2
SOFTWARE
SIA A:801
BINDING SITE FOR RESIDUE GAL A 802
03
AC3
SOFTWARE
ASN A:200 , NAG A:804 , TYR B:453 , GLY B:454 , THR B:455
BINDING SITE FOR RESIDUE NAG A 803
04
AC4
SOFTWARE
NAG A:803 , BMA A:805 , MAN A:806 , HOH A:977 , HOH A:1047 , ASN B:393 , ARG B:394
BINDING SITE FOR RESIDUE NAG A 804
05
AC5
SOFTWARE
NAG A:804 , MAN A:806 , MAN A:807 , GLN B:391 , ILE B:392 , ARG B:394
BINDING SITE FOR RESIDUE BMA A 805
06
AC6
SOFTWARE
NAG A:804 , BMA A:805 , HOH A:934 , HOH A:1035 , ASP B:330 , GLN B:391
BINDING SITE FOR RESIDUE MAN A 806
07
AC7
SOFTWARE
BMA A:805 , HOH A:953 , HOH A:964 , HOH A:1026
BINDING SITE FOR RESIDUE MAN A 807
08
AC8
SOFTWARE
ASN A:329 , SER A:331 , SER A:332 , HOH A:907 , HOH A:990
BINDING SITE FOR RESIDUE NAG A 808
09
AC9
SOFTWARE
ASN A:146 , ASN A:147 , LEU A:437
BINDING SITE FOR RESIDUE NAG A 809
10
BC1
SOFTWARE
ASN A:367 , GLU A:368 , HOH A:1040
BINDING SITE FOR RESIDUE NAG A 810
11
BC2
SOFTWARE
HOH A:950
BINDING SITE FOR RESIDUE CA A 811
12
BC3
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , HIS A:347
BINDING SITE FOR RESIDUE CA A 812
13
BC4
SOFTWARE
ARG B:118 , GLU B:119 , ARG B:152 , ARG B:224 , ALA B:246 , GLU B:276 , GLU B:277 , ARG B:292 , ASN B:294 , HIS B:347 , ARG B:371 , TYR B:406 , GAL B:802 , HOH B:920
BINDING SITE FOR RESIDUE SIA B 801
14
BC5
SOFTWARE
SIA B:801 , HOH B:952
BINDING SITE FOR RESIDUE GAL B 802
15
BC6
SOFTWARE
ASN B:200 , NAG B:804 , HOH B:947 , TYR C:453 , GLY C:454 , THR C:455
BINDING SITE FOR RESIDUE NAG B 803
16
BC7
SOFTWARE
NAG B:803 , BMA B:805 , HOH B:1005 , ASN C:393 , ARG C:394
BINDING SITE FOR RESIDUE NAG B 804
17
BC8
SOFTWARE
NAG B:804 , MAN B:806 , MAN B:807 , GLN C:391 , ASN C:393 , ARG C:394
BINDING SITE FOR RESIDUE BMA B 805
18
BC9
SOFTWARE
BMA B:805 , HOH B:928 , HOH B:1005 , GLN C:391
BINDING SITE FOR RESIDUE MAN B 806
19
CC1
SOFTWARE
BMA B:805 , HOH B:948 , HOH B:977
BINDING SITE FOR RESIDUE MAN B 807
20
CC2
SOFTWARE
ASN B:329 , SER B:331 , SER B:332 , HOH B:907
BINDING SITE FOR RESIDUE NAG B 808
21
CC3
SOFTWARE
ASN B:146 , ASN B:147 , HOH B:927
BINDING SITE FOR RESIDUE NAG B 809
22
CC4
SOFTWARE
ASN B:367 , GLU B:368 , SER B:370 , HOH B:960
BINDING SITE FOR RESIDUE NAG B 810
23
CC5
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , GLY B:346 , HIS B:347
BINDING SITE FOR RESIDUE CA B 811
24
CC6
SOFTWARE
ARG C:118 , GLU C:119 , ARG C:152 , ARG C:224 , ALA C:246 , GLU C:276 , GLU C:277 , ARG C:292 , ARG C:371 , TYR C:406 , HOH C:906 , HOH C:970
BINDING SITE FOR RESIDUE SIA C 801
25
CC7
SOFTWARE
ASN C:200 , NAG C:803 , TYR D:453 , GLY D:454 , THR D:455
BINDING SITE FOR RESIDUE NAG C 802
26
CC8
SOFTWARE
NAG C:802 , BMA C:804 , HOH C:960 , HOH C:966 , ASN D:393 , ARG D:394
BINDING SITE FOR RESIDUE NAG C 803
27
CC9
SOFTWARE
NAG C:803 , MAN C:805 , MAN C:806 , GLN D:391 , ARG D:394
BINDING SITE FOR RESIDUE BMA C 804
28
DC1
SOFTWARE
BMA C:804 , HOH C:936 , HOH C:948 , HOH C:980 , ASP D:330 , GLN D:391
BINDING SITE FOR RESIDUE MAN C 805
29
DC2
SOFTWARE
BMA C:804 , ILE D:392
BINDING SITE FOR RESIDUE MAN C 806
30
DC3
SOFTWARE
ASN C:146 , ASN C:147 , LEU C:437 , NAG C:808 , FUC C:809 , HOH C:969
BINDING SITE FOR RESIDUE NAG C 807
31
DC4
SOFTWARE
NAG C:807 , FUC C:809 , HOH C:965
BINDING SITE FOR RESIDUE NAG C 808
32
DC5
SOFTWARE
ASN C:147 , ARG C:150 , NAG C:807 , NAG C:808
BINDING SITE FOR RESIDUE FUC C 809
33
DC6
SOFTWARE
ASN C:86 , ASN C:234 , TYR C:284 , HOH C:949 , HOH C:968
BINDING SITE FOR RESIDUE NAG C 810
34
DC7
SOFTWARE
ASN C:367 , SER C:370 , ARG C:400
BINDING SITE FOR RESIDUE NAG C 811
35
DC8
SOFTWARE
ASP C:293 , GLY C:297 , ASP C:324 , GLY C:345 , HIS C:347
BINDING SITE FOR RESIDUE CA C 812
36
DC9
SOFTWARE
ARG D:118 , GLU D:119 , ARG D:152 , ARG D:224 , ALA D:246 , GLU D:276 , GLU D:277 , ARG D:292 , ARG D:371 , TYR D:406 , HOH D:928 , HOH D:983
BINDING SITE FOR RESIDUE SIA D 801
37
EC1
SOFTWARE
TYR A:453 , GLY A:454 , THR A:455 , HOH A:993 , ASN D:200 , NAG D:803 , HOH D:1010
BINDING SITE FOR RESIDUE NAG D 802
38
EC2
SOFTWARE
ASN A:393 , ARG A:394 , NAG D:802 , BMA D:804
BINDING SITE FOR RESIDUE NAG D 803
39
EC3
SOFTWARE
GLN A:391 , ARG A:394 , NAG D:803 , MAN D:805 , MAN D:806
BINDING SITE FOR RESIDUE BMA D 804
40
EC4
SOFTWARE
GLN A:391 , BMA D:804 , HOH D:965
BINDING SITE FOR RESIDUE MAN D 805
41
EC5
SOFTWARE
BMA D:804 , HOH D:1018
BINDING SITE FOR RESIDUE MAN D 806
42
EC6
SOFTWARE
ASN D:329 , SER D:331 , SER D:332 , HOH D:971 , HOH D:989
BINDING SITE FOR RESIDUE NAG D 807
43
EC7
SOFTWARE
ASN D:146 , ASN D:147 , FUL D:809 , HOH D:942
BINDING SITE FOR RESIDUE NAG D 808
44
EC8
SOFTWARE
NAG D:808 , HOH D:942
BINDING SITE FOR RESIDUE FUL D 809
45
EC9
SOFTWARE
ASN D:367 , GLU D:368 , ARG D:400
BINDING SITE FOR RESIDUE NAG D 810
46
FC1
SOFTWARE
ASP D:293 , GLY D:297 , ASP D:324 , GLY D:345 , HIS D:347
BINDING SITE FOR RESIDUE CA D 811
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4gzxa_ (A:)
1b: SCOP_d4gzxb_ (B:)
1c: SCOP_d4gzxc_ (C:)
1d: SCOP_d4gzxd_ (D:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
automated matches
(38)
Influenza a virus [TaxId: 119210]
(7)
1a
d4gzxa_
A:
1b
d4gzxb_
B:
1c
d4gzxc_
C:
1d
d4gzxd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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