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(-) Description

Title :  CRYSTAL STRUCTURE OF A CHIMERIC DAH7PS
 
Authors :  P. J. Cross, T. M. Allison, R. C. J. Dobson, G. B. Jameson, E. J. Parker
Date :  26 Aug 12  (Deposition) - 06 Feb 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Dahp, Dahps, Dah7Ps, Tim Barrel, Act Domain, Transferase, Allosteric Regulation, Aromatic Biosynthesis, Shikimate Pathway, Transferable Allostery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Cross, T. M. Allison, R. C. J. Dobson, G. B. Jameson, E. J. Parker
Engineering Allosteric Control To An Unregulated Enzyme By Transfer Of A Regulatory Domain
Proc. Natl. Acad. Sci. Usa V. 110 2111 2013
PubMed-ID: 23345433  |  Reference-DOI: 10.1073/PNAS.1217923110

(-) Compounds

Molecule 1 - PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE, 2-DEHYDRO-3- DEOXYPHOSPHOHEPTONATE ALDOLASE
    Chains: A, B, C, D
    EC Number: 2.5.1.54
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Strain: BL21(DE3) CHAPERONE 3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-103, 33-262
    Organism Scientific: THERMOTOGA MARITIMA, PYROCOCCUS FURIOSUS
    Organism Taxid: 243274, 186497
    Other Details: FUSION PROTEIN OF PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE, 2-DEHYDRO-3-DEOXYPHOSPHOHEPTONATE ALDOLASE
    Strain: MSB8, DSM 3638
    Synonym: DAH7PS

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1TYR4Mod. Amino AcidTYROSINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:1 , GLY A:40 , ILE A:41 , ILE A:42 , GLY A:43 , ASP A:45 , SER C:31 , GLN C:34 , GLU C:35 , VAL C:38BINDING SITE FOR RESIDUE TYR A 401
2AC2SOFTWARESER A:31 , GLY A:33 , GLN A:34 , GLU A:35 , ARG A:36 , VAL A:38 , MET C:1 , ILE C:41 , ILE C:42 , GLY C:43 , ASP C:45 , VAL C:65 , LEU C:66BINDING SITE FOR RESIDUE TYR A 402
3AC3SOFTWAREMET B:1 , GLY B:40 , ILE B:41 , ILE B:42 , GLY B:43 , ASP B:45 , SER D:31 , GLY D:33 , GLN D:34 , GLU D:35 , ARG D:36 , VAL D:38BINDING SITE FOR RESIDUE TYR B 401
4AC4SOFTWARESER B:31 , GLN B:34 , GLU B:35 , ARG B:36 , VAL B:38 , MET D:1 , GLY D:40 , ILE D:41 , ILE D:42 , GLY D:43 , ASP D:45BINDING SITE FOR RESIDUE TYR D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GRS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GRS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GRS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GRS)

(-) Exons   (0, 0)

(no "Exon" information available for 4GRS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeeeee....eeeeee.......hhhhhhh..eeeee...................eee..eee.....eeeee.....hhhhhhhhhhhhhhhh..eee...............hhhhhhhhhhhhhhhhh.eeeeee....hhhhhhh...eeee.hhhh.hhhhhhhhh.....eeee.....hhhhhhhhhhhhhh.....eeeee................hhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhh..hhhhh.hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4grs A   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSIESRDQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELEALGWKGYY 402
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  || 
                                                                                                                                                                                                                                                                                                                                                                      333| 
                                                                                                                                                                                                                                                                                                                                                                       401 


Chain B from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeeeee....eeeeee.......hhhhhhh..eeeee...................ee....ee.....eeeee.....hhhhhhhhhhhhhhhh..eee...............hhhhhhhhhhhhhhhhh.eeeeee....hhhhhhh...eeee.hhhh.hhhhhhhhh.....eeee.....hhhhhhhhhhhhhh.....eeeee................hhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhh........hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4grs B   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSIESRDQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELEALGWKGY 401
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  ||
                                                                                                                                                                                                                                                                                                                                                                      333|
                                                                                                                                                                                                                                                                                                                                                                       401


Chain C from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeeeee....eeeeee.......hhhhhhh..eeeee...................ee....ee.....eeeee.....hhhhhhhhhhhhhhhh..eee...............hhhhhhhhhhhhhhhh.eeeeee....hhhhhhh...eeee.hhhh.hhhhhhhhhh....eeee.....hhhhhhhhhhhhhh.....eeeee................hhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4grs C   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSIESRDQIMKVAEFLAEVGIKVLRGGAFKPRTSPYFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELEALGWKG 333
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331  
                                                                                                                                                                  137|                                                                                                                                                                                                  
                                                                                                                                                                   139                                                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeeeee....eeeeee.hhhhh.hhhhhhh..eeeee...................ee....ee.....eeeee.....hhhhhhhhhhhhhhhh..eee.............hhhhhhhhhhhhhhhhh.eeeeee....hhhhhhh...eeee.hhhh.hhhhhhhhh.....eeee.....hhhhhhhhhhhhhh.....eeeee................hhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhh........hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4grs D   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSIESRDQIMKVAEFLAEVGIKVLRGGAFKPRPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELEALGWKGY 401
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  ||   142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332||
                                                                                                                                                              133|                                                                                                                                                                                                  333|
                                                                                                                                                               136                                                                                                                                                                                                   401
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GRS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GRS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GRS)

(-) Gene Ontology  (9, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AROF_THEMA | Q9WYH8: 1rzm 1vr6 3pg8 3pg9
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        Q8U0A9_PYRFU | Q8U0A9: 1zco 4c1k 4c1l

(-) Related Entries Specified in the PDB File

1zco 3pg9