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(-) Description

Title :  THERMOTOGA MARITIMA DAH7P SYNTHASE IN COMPLEX WITH INHIBITOR
 
Authors :  P. J. Cross, R. C. J. Dobson, M. L. Patchett, E. J. Parker
Date :  31 Oct 10  (Deposition) - 26 Jan 11  (Release) - 22 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,F,G  (1x)
Biol. Unit 2:  C,D,E,H  (1x)
Keywords :  Thermotoga Maritima, Dah7Ps, Shikimate Pathway, Aromatic Biosynthesis, Tyr-Bound, Tim Barrel, Act Domain, Ferredoxin-Like Domain, Transferase, Transferase-Transferase Inhibitor Complex, Allosteric Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Cross, R. C. J. Dobson, M. L. Patchett, E. J. Parker
Tyrosine Latching Of A Regulatory Gate Affords Allosteric Control Of Aromatic Amino Acid Biosynthesis
J. Biol. Chem. V. 286 10216 2011
PubMed-ID: 21282100  |  Reference-DOI: 10.1074/JBC.M110.209924

(-) Compounds

Molecule 1 - PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.5.1.54
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7-7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AROF
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Strain: MSB8 (DSM3109)
    Synonym: 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE, DAHP SYNTHASE, PHOSPHO-2-KETO-3-DEOXYHEPTONATE ALDOLASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB   FG 
Biological Unit 2 (1x):   CDE  H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric Unit (4, 15)
No.NameCountTypeFull Name
1AZI2Ligand/IonAZIDE ION
2CL1Ligand/IonCHLORIDE ION
3NO34Ligand/IonNITRATE ION
4TYR8Mod. Amino AcidTYROSINE
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1AZI2Ligand/IonAZIDE ION
2CL-1Ligand/IonCHLORIDE ION
3NO32Ligand/IonNITRATE ION
4TYR4Mod. Amino AcidTYROSINE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1AZI-1Ligand/IonAZIDE ION
2CL-1Ligand/IonCHLORIDE ION
3NO32Ligand/IonNITRATE ION
4TYR4Mod. Amino AcidTYROSINE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:31 , GLY A:33 , GLN A:34 , GLU A:35 , ARG A:36 , VAL A:38 , MET F:1 , ILE F:2 , GLY F:40 , ILE F:41 , ILE F:42 , GLY F:43BINDING SITE FOR RESIDUE TYR A 339
02AC2SOFTWAREMET A:1 , ILE A:2 , GLY A:40 , ILE A:41 , ILE A:42 , GLY A:43 , ASP A:45 , VAL A:65 , HOH A:356 , SER F:31 , GLY F:33 , GLN F:34 , GLU F:35 , ARG F:36 , VAL F:38BINDING SITE FOR RESIDUE TYR A 340
03AC3SOFTWAREARG A:285 , GLU A:321BINDING SITE FOR RESIDUE AZI A 341
04AC4SOFTWAREPHE A:210 , MET A:211 , PHE F:242 , PHE G:210 , MET G:211BINDING SITE FOR RESIDUE NO3 A 342
05AC5SOFTWAREMET B:1 , ILE B:2 , GLY B:40 , ILE B:41 , ILE B:42 , GLY B:43 , ASP B:45 , SER G:31 , GLY G:33 , GLN G:34 , GLU G:35 , ARG G:36 , VAL G:38BINDING SITE FOR RESIDUE TYR B 339
06AC6SOFTWARESER B:31 , GLY B:33 , GLN B:34 , GLU B:35 , ARG B:36 , MET G:1 , ILE G:2 , GLY G:40 , ILE G:41 , ILE G:42 , GLY G:43 , ASP G:45BINDING SITE FOR RESIDUE TYR B 340
07AC7SOFTWAREPHE B:76BINDING SITE FOR RESIDUE AZI B 341
08AC8SOFTWARELYS B:207 , ARG B:237BINDING SITE FOR RESIDUE CL B 342
09AC9SOFTWAREMET C:1 , ILE C:2 , GLY C:40 , ILE C:41 , ILE C:42 , GLY C:43 , ASP C:45 , VAL C:65 , SER E:31 , GLY E:33 , GLN E:34 , GLU E:35 , ARG E:36 , VAL E:38BINDING SITE FOR RESIDUE TYR C 339
10BC1SOFTWARESER C:31 , GLY C:33 , GLN C:34 , GLU C:35 , ARG C:36 , VAL C:38 , MET E:1 , ILE E:41 , ILE E:42 , GLY E:43 , LEU E:66BINDING SITE FOR RESIDUE TYR C 340
11BC2SOFTWAREPHE C:210 , MET C:211 , PHE D:242 , PHE E:242 , PHE H:210 , MET H:211BINDING SITE FOR RESIDUE NO3 C 341
12BC3SOFTWARESER D:31 , GLY D:33 , GLN D:34 , GLU D:35 , ARG D:36 , VAL D:38 , MET H:1 , ILE H:2 , GLY H:40 , ILE H:41 , ILE H:42 , GLY H:43 , ASP H:45 , LEU H:66BINDING SITE FOR RESIDUE TYR D 339
13BC4SOFTWAREPHE C:242 , PHE D:210 , MET D:211 , ARG D:240 , PHE E:210 , MET E:211BINDING SITE FOR RESIDUE NO3 D 340
14BC5SOFTWAREPHE A:242 , PHE B:210 , MET B:211 , PHE F:210 , MET F:211 , ARG F:240 , PHE G:242BINDING SITE FOR RESIDUE NO3 F 339
15BC6SOFTWAREMET D:1 , ILE D:2 , GLY D:40 , ILE D:41 , ILE D:42 , GLY D:43 , ASP D:45 , HOH D:375 , SER H:31 , GLY H:33 , GLN H:34 , GLU H:35 , ARG H:36 , VAL H:38BINDING SITE FOR RESIDUE TYR H 339

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PG9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:92 -Gly A:93
2Asn F:92 -Gly F:93

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PG9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PG9)

(-) Exons   (0, 0)

(no "Exon" information available for 3PG9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:340
 aligned with AROF_THEMA | Q9WYH8 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:340
                                                                                                                                                                                                                                                                                                                                                                           338  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       | -
           AROF_THEMA     1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN--   -
               SCOP domains d3pg9a_ A: automated matches                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeeeee....eeeeee.......hhhhhhh..eeeee...................ee....ee...eeeeeee.....hhhhhhhhhhhhhhh...eee................hhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhh.eeeehhhhh.hhhhhhhhhh....eeee.....hhhhhhhhhhhhhh.....eeeee................hhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pg9 A   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVNYY 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain B from PDB  Type:PROTEIN  Length:340
 aligned with AROF_THEMA | Q9WYH8 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:340
                                                                                                                                                                                                                                                                                                                                                                           338  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       | -
           AROF_THEMA     1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN--   -
               SCOP domains d3pg9b_ B: automated matches                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeeeee....eeeeee.......hhhhhhh..eeeee...................ee....ee...eeeeeee.....hhhhhhhhhhhhhhh...eee................hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhh.eeeehhhhh.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh....eeeee................hhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhhhhhhhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pg9 B   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVNYY 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain C from PDB  Type:PROTEIN  Length:340
 aligned with AROF_THEMA | Q9WYH8 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:340
                                                                                                                                                                                                                                                                                                                                                                           338  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       | -
           AROF_THEMA     1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN--   -
               SCOP domains d3pg9c_ C: automated matches                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeeeee....eeeeee.......hhhhhh...eeeee...................ee....ee...eeeeeee.....hhhhhhhhhhhhhhh...eee................hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh....eeeee................hhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhhhhhhhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pg9 C   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVNYY 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain D from PDB  Type:PROTEIN  Length:339
 aligned with AROF_THEMA | Q9WYH8 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:339
                                                                                                                                                                                                                                                                                                                                                                           338 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       | 
           AROF_THEMA     1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN-   -
               SCOP domains d3pg9d_ D: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhh..eeeeee....eeeeee.......hhhhhh...eeeee...................ee....ee...eeeeeee.....hhhhhhhhhhhhhhh...eee...............hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhh.eeeehhhhh.hhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh....eeeee................hhhhhhhhhh...eee.......hhhhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhhhhhhhhhh..eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pg9 D   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVNY 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         


Chain E from PDB  Type:PROTEIN  Length:338
 aligned with AROF_THEMA | Q9WYH8 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           AROF_THEMA     1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN 338
               SCOP domains d3pg9e_ E: automated matches                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhh..eeeeee....eeeeee.......hhhhhhh..eeeee...................ee....ee...eeeeeee.....hhhhhhhhhhhhhh....eee................hhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhh.eeeehhhhh.hhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh....eeeee................hhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh.eee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pg9 E   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        


Chain F from PDB  Type:PROTEIN  Length:338
 aligned with AROF_THEMA | Q9WYH8 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           AROF_THEMA     1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN 338
               SCOP domains d3pg9f_ F: automated matches                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhh..eeeeee....eeeeee.......hhhhhh...eeeee...................ee....ee...eeeeeee.....hhhhhhhhhhhhhh....eee................hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhh.eeeehhhhh.hhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh....eeeee................hhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh.eee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pg9 F   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        


Chain G from PDB  Type:PROTEIN  Length:338
 aligned with AROF_THEMA | Q9WYH8 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           AROF_THEMA     1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN 338
               SCOP domains d3pg9g_ G: automated matches                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeeeee....eeeeee.......hhhhhh...eeeee...................ee....ee...eeeeeee.....hhhhhhhhhhhhhhh...eee................hhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhh.eeeehhhhh.hhhhhhhhhh....eeee.....hhhhhhhhhhhhhh.....eeeee................hhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh.eee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pg9 G   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        


Chain H from PDB  Type:PROTEIN  Length:339
 aligned with AROF_THEMA | Q9WYH8 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:339
                                                                                                                                                                                                                                                                                                                                                                           338 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       | 
           AROF_THEMA     1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN-   -
               SCOP domains d3pg9h_ H: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------------------------------DAHP_synth_1-3pg9H01 H:69-333                                                                                                                                                                                                                                            ------ Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------DAHP_synth_1-3pg9H02 H:69-333                                                                                                                                                                                                                                            ------ Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------DAHP_synth_1-3pg9H03 H:69-333                                                                                                                                                                                                                                            ------ Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------DAHP_synth_1-3pg9H04 H:69-333                                                                                                                                                                                                                                            ------ Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------DAHP_synth_1-3pg9H05 H:69-333                                                                                                                                                                                                                                            ------ Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------DAHP_synth_1-3pg9H06 H:69-333                                                                                                                                                                                                                                            ------ Pfam domains (6)
           Pfam domains (7) --------------------------------------------------------------------DAHP_synth_1-3pg9H07 H:69-333                                                                                                                                                                                                                                            ------ Pfam domains (7)
           Pfam domains (8) --------------------------------------------------------------------DAHP_synth_1-3pg9H08 H:69-333                                                                                                                                                                                                                                            ------ Pfam domains (8)
         Sec.struct. author .eeee....hhhhhhhhhhhhhh...eeeeee....eeeeee.......hhhhhhh..eeeee...................ee....ee...eeeeeee.....hhhhhhhhhhhhhh....eee................hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhh.eeee......hhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh....eeeee................hhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pg9 H   1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVNY 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PG9)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: TIM_barrel (694)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (AROF_THEMA | Q9WYH8)
molecular function
    GO:0003849    3-deoxy-7-phosphoheptulonate synthase activity    Catalysis of the reaction: D-erythrose 4-phosphate + H(2)O + phosphoenolpyruvate = 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate + phosphate.
    GO:0016832    aldehyde-lyase activity    Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0009423    chorismate biosynthetic process    The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        AROF_THEMA | Q9WYH8: 1rzm 1vr6 3pg8 4grs

(-) Related Entries Specified in the PDB File

3pg8