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(-) Description

Title :  STRUCTURE AND CONFORMATIONAL CHANGE OF A REPLICATION PROTEIN A HETEROTRIMER BOUND TO SSDNA
 
Authors :  N. P. Pavletich, F. Jie
Date :  20 Aug 12  (Deposition) - 28 Nov 12  (Release) - 28 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,K,L,X,Y,Z
Biol. Unit 1:  A,B,C,K  (1x)
Biol. Unit 2:  L,X,Y,Z  (1x)
Keywords :  Ob Fold, Ssdna Binding, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Fan, N. P. Pavletich
Structure And Conformational Change Of A Replication Protei A Heterotrimer Bound To Ssdna.
Genes Dev. V. 26 2337 2012
PubMed-ID: 23070815  |  Reference-DOI: 10.1101/GAD.194787.112

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A, X
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: HI5
    Expression System Taxid: 7108
    Gene: UM04165.1
    Organism Common: SMUT FUNGUS
    Organism Scientific: USTILAGO MAYDIS
    Organism Taxid: 237631
    Strain: 521 / FGSC 9021
 
Molecule 2 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: B, Y
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: HI5
    Expression System Taxid: 7108
    Gene: UM02579.1
    Organism Common: SMUT FUNGUS
    Organism Scientific: USTILAGO MAYDIS
    Organism Taxid: 237631
    Strain: 521 / FGSC 9021
 
Molecule 3 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: C, Z
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: HI5
    Expression System Taxid: 7108
    Gene: UM05156.1
    Organism Common: SMUT FUNGUS
    Organism Scientific: USTILAGO MAYDIS
    Organism Taxid: 237631
    Strain: 521 / FGSC 9021
 
Molecule 4 - DNA (25-MER)
    Chains: K, L
    Engineered: YES
    Organism Scientific: SYNTHETIC
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCKLXYZ
Biological Unit 1 (1x): ABCK    
Biological Unit 2 (1x):     LXYZ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS C:490 , CYS C:495 , CYS C:509 , LYS C:511 , CYS C:512BINDING SITE FOR RESIDUE ZN C 701
2AC2SOFTWARECYS Z:490 , CYS Z:495 , CYS Z:509 , LYS Z:511 , CYS Z:512BINDING SITE FOR RESIDUE ZN Z 701

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1C:490 -C:512
2Z:490 -Z:512

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GOP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GOP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GOP)

(-) Exons   (0, 0)

(no "Exon" information available for 4GOP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......ee...hhhhhh..eeeeeeeeeeee..eeeee.....eeeee.....hhhhh.eeeeeeee.....eeeeeeeee......hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4gop A   1 MEKPTPLINSSMLGQYVGQTVRIVGKVHKVTGNTLLMQTSDLGNVEIAMTPDSDVSSSTFVEVTGKVSDAGSSFQANQIREFTTVDVDLTLVENVVQISAAFPNLFSD 112
                                    10        20        30        40        50        60        70        80    ||  94       104        
                                                                                                               85|                      
                                                                                                                90                      


Chain B from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhh.................eeeeeeeeeeeee...eeeeeee....eeeeeee..........eeeeeeeeeee..eeeeee.eeee..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gop B  46 NTLRPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDYNEVMFHRLEAVHAHLQVTR 175
                                    55        65        75        85        95       105      |123       133       143       153       163       173  
                                                                                            112|                                                      
                                                                                             121                                                      


Chain C from PDB  Type:PROTEIN  Length:433
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee..ee...eeee....eeeeeeeeee....eeeeeeehhhhhhhh.......eeeee..eeee.hhhhh.....eeeee....eeee...............hhhhhhhh.......eeeeeeee...eee........eeeeeeeee.....eeeeeeehhhhhh...........eeeee..eee.....eee.....eeee...hhhhhhhhhhhhhhh...................ee.hhhhhhhh........eeeeeeeeeeee.....eeee..........ee.....eee....eee...eeee.eeeeeee..eeeeeeehhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhh....eeeeeeeeeeeee..eeeeeeeeeeeee.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gop C 182 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDATDVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRGWYDNDGAHAQFQPYTNGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVDFAKAGMELVDAIRAYM 623
                                   191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431|      450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620   
                                                                                                                                                                                                                                                                                   431|                                                                                                                                                                                      
                                                                                                                                                                                                                                                                                    441                                                                                                                                                                                      


Chain K from PDB  Type:DNA  Length:25
                                                         
                 4gop K   1 TTTTTTTTTTTTTTTTTTTTTTTTT  25
                                    10        20     


Chain L from PDB  Type:DNA  Length:20
                                                    
                 4gop L   1 TTTTTTTTTTTTTTTTTTTT  22
                                    12        22
                                    9|          
                                    12          


Chain X from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......ee...hhhhhh..eeeeeeeeeeee..eeeee.....eeeee.....hhhhh.eeeeeeee......eeeeeeee......hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4gop X   1 MEKPTPLINSSMLGQYVGQTVRIVGKVHKVTGNTLLMQTSDLGNVEIAMTPDSDVSSSTFVEVTGKVSDAGSSFQANQIREFTTVDVDLTLVENVVQISAAFPNLFSD 112
                                    10        20        30        40        50        60        70        80    ||  94       104        
                                                                                                               85|                      
                                                                                                                90                      


Chain Y from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhh.................eeeeeeeeeeeee...eeeeeee....eeeeeee..........eeeeeeeeeee..eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gop Y  46 NTLRPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDYNEVMFHRLEAVHAHLQVTR 175
                                    55        65        75        85        95       105      |123       133       143       153       163       173  
                                                                                            112|                                                      
                                                                                             121                                                      


Chain Z from PDB  Type:PROTEIN  Length:433
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.......eeeee..ee...ee........eeeeeeee....eeeeeeehhhhhhhh.......eeeee..eeee.hhhhh.....eeeee....eeee...............hhhhhhhh.......eeeeeeee...ee..........eeeeeeee.....eeeeeeehhhhhh...........eeeee..eee.....eee.....eeee...hhhhhhhhhhhhhhh...................ee.hhhhhhhh........eeeeeeeeeeee.....eeee..........ee.....eee....eee...eeeeeeeeeeee..eeeeeeeehhhhhhhh..hhhhhhhhhh.hhhhhhhhhhh....eeeeeeeeee........eeeeeeeeee.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gop Z 182 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDATDVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRGWYDNDGAHAQFQPYTNGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVDFAKAGMELVDAIRAYM 623
                                   191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431|      450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620   
                                                                                                                                                                                                                                                                                   431|                                                                                                                                                                                      
                                                                                                                                                                                                                                                                                    441
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GOP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GOP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GOP)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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