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(-) Description

Title :  SCHIZOSACCHAROMYCES POMBE DJ-1 T114V MUTANT
 
Authors :  P. Madzelan, T. Labunska, M. A. Wilson
Date :  01 Aug 12  (Deposition) - 15 Aug 12  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Dj-1/Pfpi Family, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Madzelan, T. Labunska, M. A. Wilson
Influence Of Peptide Dipoles And Hydrogen Bonds On Reactive Cysteine Pk(A) Values In Fission Yeast Dj-1.
Febs J. V. 279 4111 2012
PubMed-ID: 22971103  |  Reference-DOI: 10.1111/FEBS.12004

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN C22E12.03C
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SPAC22E12.03C
    Mutation: YES
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
    Synonym: DJ-1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1CSD4Mod. Amino Acid3-SULFINOALANINE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1CSD2Mod. Amino Acid3-SULFINOALANINE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CSD2Mod. Amino Acid3-SULFINOALANINE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:84 , ASP A:179 , HOH A:311 , HOH A:396BINDING SITE FOR RESIDUE EDO A 201
2AC2SOFTWAREGLU C:14 , PHE C:17 , SER C:18 , MET C:46 , HOH C:502 , SER D:18 , HOH D:310BINDING SITE FOR RESIDUE EDO C 201
3AC3SOFTWAREPHE C:17 , TRP C:21 , SER C:33 , MET C:52 , TYR C:53 , ASN C:55 , VAL D:50 , GLU D:51BINDING SITE FOR RESIDUE EDO C 202
4AC4SOFTWAREHOH C:421 , HOH C:563 , HOH D:244 , HOH D:246BINDING SITE FOR RESIDUE MG C 203
5AC5SOFTWAREHOH A:514 , HOH A:515 , HOH C:524 , HOH C:564 , HOH C:565BINDING SITE FOR RESIDUE MG C 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GE3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GE3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GE3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GE3)

(-) Exons   (0, 0)

(no "Exon" information available for 4GE3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains d4ge3a_ A: automated matches                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhh...eeeeee......eee.....eee..ee.hhh.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhh....ee..hhhhhhhhhhh..ee....eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ge3 A   1 MVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIcAGVLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 191
                                    10        20        30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190 
                                                                                                                                        111-CSD                                                                            


Chain B from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains d4ge3b_ B: automated matches                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhh...eeeeee......eee.....eee..ee.hhh.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhh.....ee..hhhhhhhhhhh..ee....eeee..eeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ge3 B   1 MVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIcAGVLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 191
                                    10        20        30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190 
                                                                                                                                        111-CSD                                                                            


Chain C from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains d4ge3c_ C: automated matches                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhh...eeeeee......eee.....eee..ee.hhh.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhh.....ee..hhhhhhhhhhh..ee....eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ge3 C   1 MVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIcAGVLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 191
                                    10        20        30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190 
                                                                                                                                        111-CSD                                                                            


Chain D from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains d4ge3d_ D: automated matches                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhh...eeeeee......eee.....eee..ee.hhh.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhh.....ee..hhhhhhhhhhh..ee....eeee..eeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ge3 D   1 MVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIcAGVLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 191
                                    10        20        30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190 
                                                                                                                                        111-CSD
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GE3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GE3)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  DJ1_SCHPO | Q10356
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DJ1_SCHPO | Q10356: 4ge0 4qyt

(-) Related Entries Specified in the PDB File

4gdn WILD-TYPE SCHIZOSACCHAROMYCES POMBE
4ge0 SCHIZOSACCHAROMYCES POMBE DJ-1 T114P MUTANT