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(-) Description

Title :  SCHIZOSACCHAROMYCES POMBE DJ-1 T114P MUTANT
 
Authors :  P. Madzelan, T. Labunska, M. A. Wilson
Date :  01 Aug 12  (Deposition) - 15 Aug 12  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Dj-1/Pfpi Family, Unknown Function, Cysteine-Sulfinic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Madzelan, T. Labunska, M. A. Wilson
Influence Of Peptide Dipoles And Hydrogen Bonds On Reactive Cysteine Pk(A) Values In Fission Yeast Dj-1.
Febs J. V. 279 4111 2012
PubMed-ID: 22971103  |  Reference-DOI: 10.1111/FEBS.12004

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN C22E12.03C
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SPAC22E12.03C
    Mutation: YES
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
    Synonym: DJ-1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1CSD4Mod. Amino Acid3-SULFINOALANINE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1CSD2Mod. Amino Acid3-SULFINOALANINE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1CSD2Mod. Amino Acid3-SULFINOALANINE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY B:11 , LYS B:45 , MET B:46 , SER B:47 , ASP B:49 , HOH B:336 , HOH B:352BINDING SITE FOR RESIDUE EDO B 201
2AC2SOFTWAREGLU C:14 , PHE C:17 , SER C:18 , MET C:46 , HOH C:509 , SER D:18 , HOH D:312BINDING SITE FOR RESIDUE EDO C 201
3AC3SOFTWAREHOH B:503 , HOH C:419 , HOH D:244 , HOH D:246BINDING SITE FOR RESIDUE MG C 202
4AC4SOFTWAREHOH A:437 , HOH C:531 , HOH C:540 , HOH C:589 , HOH C:590BINDING SITE FOR RESIDUE MG C 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GE0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GE0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GE0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GE0)

(-) Exons   (0, 0)

(no "Exon" information available for 4GE0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains d4ge0a_ A: automated matches                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhh...eeeeee......eee.....eee..ee.hhh.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhh.....ee..hhhhhhhhhh...ee....eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ge0 A   2 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIcAGPLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 191
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191
                                                                                                                                       111-CSD                                                                            


Chain B from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains d4ge0b_ B: automated matches                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhh...eeeeee......eee.....eee..ee.hhh.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhh.....ee..hhhhhhhhhhhh.ee....eeee..eeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ge0 B   2 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIcAGPLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 191
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191
                                                                                                                                       111-CSD                                                                            


Chain C from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains d4ge0c_ C: automated matches                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhh...eeeeee......eee.....eee..ee.hhh.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhh.....ee..hhhhhhhhhhh..ee....eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ge0 C   2 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIcAGPLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 191
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191
                                                                                                                                       111-CSD                                                                            


Chain D from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains d4ge0d_ D: automated matches                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhh...eeeeee......eee.....eee..ee.hhh.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhh.....ee..hhhhhhhhhhh..ee....eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ge0 D   2 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIcAGPLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 191
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191
                                                                                                                                       111-CSD
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GE0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GE0)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  DJ1_SCHPO | Q10356
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DJ1_SCHPO | Q10356: 4ge3 4qyt

(-) Related Entries Specified in the PDB File

4gdh WILD-TYPE SCHIZOSACCHAROMYCES POMBE DJ-1
4ge3