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(-) Description

Title :  CRYSTAL STRUCTURE OF MURINE NF-KAPPAB INDUCING KINASE (NIK) BOUND TO A 6-ALKYNYLINDOLINE (CMP1)
 
Authors :  S. G. Hymowitz, De Leon-Boenig G.
Date :  13 Jul 12  (Deposition) - 15 Aug 12  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Non-Rd Kinase, Protein Serine/Threonine Kinase, Nf-Kappab, Structure- Based Drug Design, Map3K14, Transferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. De Leon-Boenig, K. K. Bowman, J. A. Feng, T. Crawford, C. Everett, Y. Franke, A. Oh, M. Stanley, S. T. Staben, M. A. Starovasnik, H. J. Wallweber, J. Wu, L. C. Wu, A. R. Johnson, S. G. Hymowitz
The Crystal Structure Of The Catalytic Domain Of The Nf-Kappab Inducing Kinase Reveals A Narrow But Flexible Active Site.
Structure V. 20 1704 2012
PubMed-ID: 22921830  |  Reference-DOI: 10.1016/J.STR.2012.07.013

(-) Compounds

Molecule 1 - NF-KAPPA-BETA-INDUCING KINASE
    Chains: A, B
    EC Number: 2.7.11.25
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PACGP67
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS TRANSFER VECTOR
    Gene: MAP3K14, NF-KAPPAB INDUCING KINASE, NIK
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: SERINE/THREONINE-PROTEIN KINASE NIK

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
10WC2Ligand/Ion(2R)-4-[1-(2-AMINO-5-CHLOROPYRIMIDIN-4-YL)-2,3-DIHYDRO-1H-INDOL-6-YL]-2-(1,3-THIAZOL-2-YL)BUT-3-YN-2-OL
2SO43Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
10WC1Ligand/Ion(2R)-4-[1-(2-AMINO-5-CHLOROPYRIMIDIN-4-YL)-2,3-DIHYDRO-1H-INDOL-6-YL]-2-(1,3-THIAZOL-2-YL)BUT-3-YN-2-OL
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
10WC1Ligand/Ion(2R)-4-[1-(2-AMINO-5-CHLOROPYRIMIDIN-4-YL)-2,3-DIHYDRO-1H-INDOL-6-YL]-2-(1,3-THIAZOL-2-YL)BUT-3-YN-2-OL
2SO41Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:647 , ARG A:650 , ARG A:651BINDING SITE FOR RESIDUE SO4 A 701
2AC2SOFTWAREARG A:637 , LYS A:638 , GLU A:639 , HIS A:642BINDING SITE FOR RESIDUE SO4 A 702
3AC3SOFTWAREARG A:410 , VAL A:416 , ALA A:429 , GLU A:442 , VAL A:455 , ILE A:469 , MET A:471 , GLU A:472 , LEU A:474 , GLN A:481 , LEU A:524 , CYS A:535 , ASP A:536 , PHE A:537BINDING SITE FOR RESIDUE 0WC A 703
4AC4SOFTWAREARG B:637 , LYS B:638 , GLU B:639 , HIS B:642BINDING SITE FOR RESIDUE SO4 B 701
5AC5SOFTWAREARG B:410 , GLY B:411 , VAL B:416 , ALA B:429 , LYS B:431 , GLU B:442 , VAL B:455 , ILE B:469 , MET B:471 , GLU B:472 , LEU B:474 , GLN B:481 , LEU B:524 , CYS B:535 , ASP B:536 , PHE B:537BINDING SITE FOR RESIDUE 0WC B 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G3E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G3E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G3E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G3E)

(-) Exons   (0, 0)

(no "Exon" information available for 4G3E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh..eee.hhhhhhhhhh....eeeee.................eee............eeeeee.....eeeeeeee.hhhhhhhhhh...........eeeeeee..eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee......eee......ee.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhh.hhhhhh....hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g3e A 334 PVEEYLVHALQGSVSSGQAHSLASLAKTWSDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYKEPR 675
                                   343       353       363|      387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537      |560       570       580       590       600 ||    611       621       631       641       651       661       671    
                                                       363|                                                                                                                                                                   544|                                         602|                                                                       
                                                        378                                                                                                                                                                    558                                          604                                                                       


Chain B from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..eee.hhhhhhhhhhhhh.eeeee.................eee............eeeeee.....eeeeeeee.hhhhhhhhhh...........eeeeeee..eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee......eee......ee..................hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhh.hhhhhh....hhhhhhhhhhhh........hhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g3e B 334 PVEEYLVHALQGSVSSGQAHSLASLAKTWSDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYKEPR 675
                                   343       353       363|      387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597  ||   610       620       630       640       650       660       670     
                                                       363|                                                                                                                                                                                                                           600|                                                                       
                                                        378                                                                                                                                                                                                                            604
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G3E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G3E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G3E)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)

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        M3K14_MOUSE | Q9WUL6: 4g3c 4g3f 4g3g 5t8o 5t8p 5t8q

(-) Related Entries Specified in the PDB File

4g3c 4g3d 4g3f 4g3g