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(-) Description

Title :  CRYSTAL STRUCTURE OF APO MURINE NF-KAPPAB INDUCING KINASE (NIK)
 
Authors :  S. G. Hymowitz, De Leon-Boenig G.
Date :  13 Jul 12  (Deposition) - 08 Aug 12  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Non-Rd Kinase, Protein Serine/Threonine Kinase, Nf-Kappab, Map3K14, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. De Leon-Boenig, K. K. Bowman, J. A. Feng, T. Crawford, C. Everett, Y. Franke, A. Oh, M. Stanley, S. T. Staben, M. A. Starovasnik, H. J. Wallweber, J. Wu, L. C. Wu, A. R. Johnson, S. G. Hymowitz
The Crystal Structure Of The Catalytic Domain Of The Nf-Kappab Inducing Kinase Reveals A Narrow But Flexible Active Site.
Structure V. 20 1704 2012
PubMed-ID: 22921830  |  Reference-DOI: 10.1016/J.STR.2012.07.013

(-) Compounds

Molecule 1 - NF-KAPPA-BETA-INDUCING KINASE
    Chains: A, B
    EC Number: 2.7.11.25
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PACGP67
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS TRANSFER VECTOR
    Gene: MAP3K14, NF-KABBAB INDUCING KINASE, NIK
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: SERINE/THREONINE-PROTEIN KINASE NIK

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:446 , VAL A:455 , MET A:471 , LEU A:534 , CYS A:535 , ASP A:536 , PHE A:537 , HOH A:873BINDING SITE FOR RESIDUE SO4 A 701
2AC2SOFTWAREARG A:650 , ARG A:651BINDING SITE FOR RESIDUE SO4 A 702
3AC3SOFTWAREARG A:637 , LYS A:638 , GLU A:639 , HIS A:642BINDING SITE FOR RESIDUE SO4 A 703
4AC4SOFTWARECYS B:446 , VAL B:455 , MET B:471 , LEU B:534 , CYS B:535 , ASP B:536 , PHE B:537 , HOH B:883BINDING SITE FOR RESIDUE SO4 B 701
5AC5SOFTWARETYR B:507 , ARG B:511BINDING SITE FOR RESIDUE SO4 B 702
6AC6SOFTWAREARG B:637 , LYS B:638 , GLU B:639 , HIS B:642BINDING SITE FOR RESIDUE SO4 B 703

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G3C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G3C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G3C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G3C)

(-) Exons   (0, 0)

(no "Exon" information available for 4G3C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh..eee.hhhhhhhhhhhhh.eeeee.................eee............eeeeee.....eeeeeeee.hhhhhhhhhh...........eeeeeee..eeeeee.....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee......eee......ee.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..........hhhhhhhhh.hhhhhh....hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g3c A 334 PVEEYLVHALQGSVSSGQAHSLASLAKTWSDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYKEPR 675
                                   343       353       363|      387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537      |560       570       580       590       600       610       620       630       640       650       660       670     
                                                       363|                                                                                                                                                                   544|                                                                                                                     
                                                        378                                                                                                                                                                    558                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..eee.hhhhhhhhhhhhh.eeeee.................eee............eeeeee.....eeeeeeee.hhhhhhhhhh...........eeeeeee..eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee......eee......ee..................hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhh....hhhhhhhhhhhh........hhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g3c B 334 PVEEYLVHALQGSVSSGQAHSLASLAKTWSDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYKEP 674
                                   343       353       363|      387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       
                                                       363|                                                                                                                                                                                                                                                                                                        
                                                        378
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G3C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G3C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G3C)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        M3K14_MOUSE | Q9WUL6: 4g3e 4g3f 4g3g 5t8o 5t8p 5t8q

(-) Related Entries Specified in the PDB File

4g3d 4g3e 4g3f 4g3g