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(-) Description

Title :  CRYSTAL STRUCTURE OF GSK6924 BOUND TO PERK (R587-R1092, DELETE A660-T867) AT 2.70 A RESOLUTION
 
Authors :  R. T. Gampe, J. M. Axten
Date :  13 Jul 12  (Deposition) - 08 Aug 12  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Deletion Mutant, Catalytic Domain, Synthetic Inhibitor, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Axten, J. R. Medina, Y. Feng, A. Shu, S. P. Romeril, S. W. Grant, W. H. Li, D. A. Heerding, E. Minthorn, T. Mencken, C. Atkins, Q. Liu, S. Rabindran, R. Kumar, X. Hong, A. Goetz, T. Stanley, J. D. Taylor, S. D. Sigethy, G. H. Tomberlin, A. M. Hassell, K. M. Kahler, L. M. Shewchuk, R. T. Gampe
Discovery Of 7-Methyl-5-(1-{[3-(Trifluoromethyl)Phenyl]Acetyl}-2, 3- Dihydro-1H-Indol-5-Yl)-7H-Pyrrolo[2, 3-D]Pyrimidin-4-Amine (Gsk2606414), A Potent And Selective First-In-Class Inhibitor Of Protein Kinase R (Pkr)-Like Endoplasmic Reticulum Kinase (Perk).
J. Med. Chem. V. 55 7193 2012
PubMed-ID: 22827572  |  Reference-DOI: 10.1021/JM300713S

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE 3
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 588-660,869-1093
    Gene: EIF2AK3, PEK, PERK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PKR-LIKE ENDOPLASMIC RETICULUM KINASE, PERK, PANCREATIC EIF2-ALPHA KINASE, HSPEK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
19241Ligand/Ion1-[5-(4-AMINOTHIENO[3,2-C]PYRIDIN-3-YL)-2,3-DIHYDRO-1H-INDOL-1-YL]-2-PHENYLETHANONE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:619 , LEU A:642 , VAL A:651 , TYR A:653 , MET A:887 , GLN A:888 , CYS A:890 , GLY A:953 , ASP A:954 , HOH A:1201BINDING SITE FOR RESIDUE 924 A 1101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G34)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G34)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G34)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G34)

(-) Exons   (0, 0)

(no "Exon" information available for 4G34)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                         
               SCOP domains d4g34a_ A: automated matches                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhheeeeeeeee...eeeeeeee.....eeeeeeeee..hhhhhhhhhhhhhhhh.........eeeeeee...eeeeeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...........hhhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4g34 A  586 GRYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFED 1078
                                   595       605       615       625       635       645       655   ||||883       893       903       913       923       933       943       953   ||  990      1000      1010      1020      1030      1040      1050      1060      1070        
                                                                                                   659|||                                                                          957|                                                                                             
                                                                                                    868||                                                                           985                                                                                             
                                                                                                     869|                                                                                                                                                                           
                                                                                                      880
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G34)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G34)

(-) Gene Ontology  (58, 58)

Asymmetric/Biological Unit(hide GO term definitions)

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  4g34
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 Related Entries

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UniProtKB/Swiss-Prot
        E2AK3_HUMAN | Q9NZJ5: 4g31 4m7i 4x7h 4x7j 4x7k 4x7l 4x7n 4x7o 4yzs 5sv7

(-) Related Entries Specified in the PDB File

3qd2 4g31