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(-) Description

Title :  HUMAN AMINOPEPTIDASE N (CD13) IN COMPLEX WITH ANGIOTENSIN IV
 
Authors :  A. H. Wong, J. M. Rini
Date :  05 Jul 12  (Deposition) - 05 Sep 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Metalloprotease, Hydrolase-Hormone Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. H. Wong, D. Zhou, J. M. Rini
The X-Ray Crystal Structure Of Human Aminopeptidase N Reveals A Novel Dimer And The Basis For Peptide Processing.
J. Biol. Chem. V. 287 36804 2012
PubMed-ID: 22932899  |  Reference-DOI: 10.1074/JBC.M112.398842

(-) Compounds

Molecule 1 - AMINOPEPTIDASE N
    Chains: A
    EC Number: 3.4.11.2
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 66-967
    Gene: ANPEP, APN, CD13, PEPN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AP-N, HAPN, ALANYL AMINOPEPTIDASE, AMINOPEPTIDASE M, AP-M, MICROSOMAL AMINOPEPTIDASE, MYELOID PLASMA MEMBRANE GLYCOPROTEIN CD13, GP150
 
Molecule 2 - ANGIOTENSIN IV
    Chains: C
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: PEPTIDE SYNTHESIZED
    Synonym: SERPIN A8, ANGIOTENSIN-1, ANGIOTENSIN I, ANG I, ANGIOTENSIN- 2, ANGIOTENSIN II, ANG II, ANGIOTENSIN-3, ANGIOTENSIN III, ANG III, DES-ASP[1]-ANGIOTENSIN II
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 21)

Asymmetric/Biological Unit (3, 21)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO411Ligand/IonSULFATE ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:128 , GLU A:183 , GLY A:184 , GLU A:185 , HOH A:1486 , HOH A:1616BINDING SITE FOR RESIDUE NAG A 1001
02AC2SOFTWARESER A:84 , ARG A:86 , ARG A:110 , ASN A:234 , THR A:271 , NAG A:1003BINDING SITE FOR RESIDUE NAG A 1002
03AC3SOFTWARENAG A:1002 , BMA A:1004BINDING SITE FOR RESIDUE NAG A 1003
04AC4SOFTWARENAG A:1003 , HOH A:1764BINDING SITE FOR RESIDUE BMA A 1004
05AC5SOFTWARELYS A:241 , LEU A:243 , SER A:255 , PRO A:257 , ASN A:265BINDING SITE FOR RESIDUE NAG A 1005
06AC6SOFTWARETYR A:316 , ASN A:319 , HOH A:1677 , HOH A:1724BINDING SITE FOR RESIDUE NAG A 1006
07AC7SOFTWAREASP A:433 , GLN A:596 , LEU A:624 , ASN A:625 , NAG A:1008 , HOH A:1374 , HOH A:1663 , HOH A:1791 , HOH A:1931BINDING SITE FOR RESIDUE NAG A 1007
08AC8SOFTWAREASN A:430 , NAG A:1007BINDING SITE FOR RESIDUE NAG A 1008
09AC9SOFTWAREGLU A:579 , THR A:677 , LEU A:678 , ASN A:681 , HOH A:1135 , HOH A:1211 , HOH A:1685BINDING SITE FOR RESIDUE NAG A 1009
10BC1SOFTWAREGLN A:498 , SER A:502 , GLU A:523 , ALA A:524 , ASN A:527 , GLU A:781BINDING SITE FOR RESIDUE NAG A 1010
11BC2SOFTWARELEU A:131 , GLY A:134 , HIS A:135 , ARG A:136 , LYS A:152 , THR A:153 , HOH A:1528 , HOH A:1777BINDING SITE FOR RESIDUE SO4 A 1011
12BC3SOFTWAREARG A:136 , THR A:153 , GLU A:154 , LEU A:155 , HOH A:1777BINDING SITE FOR RESIDUE SO4 A 1012
13BC4SOFTWAREARG A:690 , HOH A:1708 , HOH A:1739 , HOH A:1969 , HOH A:1972BINDING SITE FOR RESIDUE SO4 A 1013
14BC5SOFTWARETYR A:198 , MET A:199 , ARG A:305 , ARG A:855 , HOH A:1435 , HOH A:1593BINDING SITE FOR RESIDUE SO4 A 1014
15BC6SOFTWARESER A:562 , ARG A:606 , HOH A:1680 , HOH A:1920BINDING SITE FOR RESIDUE SO4 A 1015
16BC7SOFTWARESER A:375 , SER A:377 , SER A:794 , LYS A:827 , HOH A:1103BINDING SITE FOR RESIDUE SO4 A 1016
17BC8SOFTWAREARG A:606 , GLN A:645 , ARG A:648 , HOH A:1620BINDING SITE FOR RESIDUE SO4 A 1017
18BC9SOFTWAREASN A:128 , TYR A:129 , ARG A:136 , LEU A:155 , HOH A:1616 , HOH A:1702BINDING SITE FOR RESIDUE SO4 A 1018
19CC1SOFTWAREASN A:736 , PRO A:744 , GLU A:745 , HOH A:1437 , HOH A:1743 , HOH A:1813BINDING SITE FOR RESIDUE SO4 A 1019
20CC2SOFTWARESER A:651 , ARG A:658 , GLN A:691 , HOH A:1647BINDING SITE FOR RESIDUE SO4 A 1020
21CC3SOFTWAREARG A:537 , LYS A:967BINDING SITE FOR RESIDUE SO4 A 1021

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:761 -A:768
2A:798 -A:834

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:213 -Ala A:214

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FYS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FYS)

(-) Exons   (0, 0)

(no "Exon" information available for 4FYS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:903
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh......eeeeeeeeeeee..........eeeeeeeeeeee.....eeeee....ee.......eeeee........eeeeeee....eeeeee.......eeeeeeeeeeee......eeeeeeeee..eeeeeeeee....hhhhh...........eeeeeeeee...eeee........eee..eeeeeeee.......hhhhh.eeee..eeeeee.....eeeeeehhhhhhh..hhhhhhhhhhhhhhhhhhh.......eeeeeee......ee....eeeee.hhh.......hhhhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhh......hhhhhhhhhhh....eeeeee....eeeeee....................eee.eee..ee...eee...eee.hhhh......eee.hhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fys A  65 PDQSKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK 967
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904       914       924       934       944       954       964   


Chain C from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4fys C   1 VYIHPF   6
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FYS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FYS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FYS)

(-) Gene Ontology  (126, 129)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gln A:213 - Ala A:214   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AMPN_HUMAN | P15144: 4fyq 4fyr 4fyt 5lhd
        ANGT_HUMAN | P01019: 1n9u 1n9v 2jp8 2wxw 2x0b 3ck0 3woo 3wor 4aa1 4aph 5e2q

(-) Related Entries Specified in the PDB File

4fyq 4fyr 4fyt