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(-) Description

Title :  CRYSTAL STRUCTURE OF A SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE WITH SURFACE MUTATION D44G FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH CJ37
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  19 Jun 12  (Deposition) - 01 Aug 12  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Isomerase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. W. Begley, D. Fox, D. Jenner, C. Juli, P. G. Pierce, J. Abendroth, M. Muruthi, K. Safford, V. Anderson, K. Atkins, S. R. Barnes, S. O. Moen A. C. Raymond, R. Stacy, P. J. Myler, B. L. Staker, N. J. Harmer, I. H. Norville, U. Holzgrabe, M. Sarkar-Tyson, T. E. Edwards, D. D. Lorimer
A Structural Biology Approach Enables The Development Of Antimicrobials Targeting Bacterial Immunophilins.
Antimicrob. Agents Chemother. V. 58 1458 2014
PubMed-ID: 24366729  |  Reference-DOI: 10.1128/AAC.01875-13

(-) Compounds

Molecule 1 - UBIQUITIN-LIKE PROTEIN SMT3, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
    Chains: A, B
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-HISSMT
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: Q12306 RESIDUES 13-98, Q3JK38 RESIDUES 2-113
    Gene: BURPS1710B_A0907, SMT3, YDR510W, D9719.15
    Mutation: YES
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI, SACCHAROMYCES CEREVISIAE
    Organism Taxid: 320372, 559292
    Strain: 1710B, S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
18542Ligand/IonETHYL (2S)-1-(BENZYLSULFONYL)PIPERIDINE-2-CARBOXYLATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
18541Ligand/IonETHYL (2S)-1-(BENZYLSULFONYL)PIPERIDINE-2-CARBOXYLATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
18541Ligand/IonETHYL (2S)-1-(BENZYLSULFONYL)PIPERIDINE-2-CARBOXYLATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:33 , PHE A:43 , PHE A:53 , VAL A:62 , ILE A:63 , TRP A:66 , TYR A:89 , ILE A:98 , PHE A:106 , VAL B:56 , GLY B:58 , GLY B:59BINDING SITE FOR RESIDUE 854 A 300
2AC2SOFTWAREARG A:49 , TYR B:33 , PHE B:43 , MET B:61 , VAL B:62 , ILE B:63 , TRP B:66 , TYR B:89 , ILE B:98 , PHE B:106 , HOH B:475BINDING SITE FOR RESIDUE 854 B 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FN2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FN2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FN2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FN2)

(-) Exons   (0, 0)

(no "Exon" information available for 4FN2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeeeeee....hhhhhhhhhhhh..hhh.eeeee..ee...............eeeeeee.......eee.....eeeeee...........eeeeeeeeee....eeee.......eeee......hhhhhhhh.......eeeeeehhhhh...............eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn2 A -76 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 113
                                   -67       -57       -47       -37       -27       -17        -7         3        13        23        33        43        53        63        73        83        93       103       113


Chain B from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeee.....hhhhhhhhhhhh..hhh.eeeee..ee......hhhhh.....eeeeee........ee.....eeeeee...........eeeeeeeeee....eeee.......eeee......hhhhhhhh.......eeeeeehhhhh...............eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn2 B -76 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 113
                                   -67       -57       -47       -37       -27       -17        -7         3        13        23        33        43        53        63        73        83        93       103       113
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FN2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FN2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FN2)

(-) Gene Ontology  (13, 13)

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  SMT3_YEAST | Q12306
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q3JK38_BURP1 | Q3JK38: 3uqa 5klx
        SMT3_YEAST | Q12306: 1euv 1l2n 2eke 3pge 3qht 3tix 3uf8 3uqa 3uqb 3v60 3v61 3v62 3vaw 4g50 4ggq 4giv 5d6j 5jne 5klx
UniProtKB/TrEMBL
        Q3JK38_BURP1 | Q3JK38: 2l2s 3uf8 3uqb 3vaw 4dz2 4dz3 4g50 4ggq 4giv

(-) Related Entries Specified in the PDB File

2keo
2ko7
2l2s
3uf8 RELATED ID: SSGCID-BUPSA.00130.A RELATED DB: TARGETTRACK
3uqa
3uqb
3vaw
4dz2
4dz3