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(-) Description

Title :  S-FORMYLGLUTATHIONE HYDROLASE W197I VARIANT CONTAINING COPPER
 
Authors :  P. M. Legler, C. B. Millard
Date :  14 Jun 12  (Deposition) - 05 Sep 12  (Release) - 03 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidation Sensor Motif, Esterase Activity Activation, Esterase Activity Inhibition, Cysteine Sulfinic Acid, Cys-60, Hydrolase- Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. M. Legler, D. H. Leary, W. J. Hervey, C. B. Millard
A Role For His-160 In Peroxide Inhibition Of S. Cerevisiae S-Formylglutathione Hydrolase: Evidence For An Oxidation Sensitive Motif.
Arch. Biochem. Biophys. V. 528 7 2012
PubMed-ID: 22906720  |  Reference-DOI: 10.1016/J.ABB.2012.08.001

(-) Compounds

Molecule 1 - S-FORMYLGLUTATHIONE HYDROLASE
    Chains: A, B
    EC Number: 3.1.2.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YJL068C, HRE299, J1102
    Mutation: YES
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: FGH

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CSD2Mod. Amino Acid3-SULFINOALANINE
2CU2Ligand/IonCOPPER (II) ION
3SDP2Mod. Amino Acid2-AMINO-3-(DIETHOXY-PHOSPHORYLOXY)-PROPIONIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:1 , HIS A:140 , HOH A:454BINDING SITE FOR RESIDUE CU A 301
2AC2SOFTWAREMET B:1 , HIS B:140 , HOH B:473BINDING SITE FOR RESIDUE CU B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FLM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:117 -Pro A:118
2Glu B:117 -Pro B:118

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FLM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FLM)

(-) Exons   (0, 0)

(no "Exon" information available for 4FLM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4flma_ A: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..eeeeeeeee......eeeeeeeehhhhhh.....eeeeeee......hhhhhhhhhhhhhhhhhh.eeeee..............................hhhhhhhhhhhhhhhhhhh......eeeeeeeeeee.hhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhh.......eeeeee....hhhhhh..hhhhhhh........eeeeee.....hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4flm A   1 MKVVKEFSVCGGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDNKRIPTVFYLSGLTcTPDNASEKAFWQFQADKYGFAIVFPDTSPRGGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHsMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPIGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYFVSTFVPEHAEFHARNLGLI 299
                                    10        20        30        40 ||     53      | 63        73        83       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
                                                                    42|            60-CSD                         91|                                                          161-SDP                                                                                                                                      
                                                                     46                                           100                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4flmb_ B: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..eeeeeeeee......eeeeeeeehhhhhh......eeeee.....hhhhhhhhhhhhhhhhhhh.eeee...................................hhhhhhhhhhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.......eeeeee...........hhhhhhhh........eeeeee.....hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4flm B   1 MKVVKEFSVCGGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDKRIPTVFYLSGLTcTPDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNDVKLDFLDNVAITGHsMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPIGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYFVSTFVPEHAEFHARNLGLI 299
                                    10        20        30        40 ||     54     |  64        74        84        94 ||    108       118       128       138   ||  151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
                                                                    42|           60-CSD                              96|                                      142|            161-SDP                                                                                                                                      
                                                                     47                                               101                                       146
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FLM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FLM)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SFGH_YEAST | P40363: 1pv1 3c6b 4fol

(-) Related Entries Specified in the PDB File

1pv1 S-FORMYLGLUTATHIONE HYDROLASE
3c6b S-FORMYLGLUTATHIONE HYDROLASE W197I VARIANT CONTAINING A CYSTEINE SULFENIC ACID
4fol S-FORMYLGLUTATHIONE HYDROLASE VARIANT H160I