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(-) Description

Title :  CRYSTAL STRUCTURE OF FERREDOXIN-NADP REDUCTASE FROM BURKHOLDERIA THAILANDENSIS E264 WITH BOUND FAD
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  12 Jun 12  (Deposition) - 20 Jun 12  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ssgcid, Nih, Niaid, Structural Genomics, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Baugh, L. A. Gallagher, R. Patrapuvich, M. C. Clifton, A. S. Gardberg, T. E. Edwards, B. Armour, D. W. Begley, S. H. Dieterich, D. M. Dranow, J. Abendroth, J. W. Fairman, D. Fox, B. L. Staker, I. Phan, A. Gillespie, R. Choi, S. Nakazawa-Hewitt, M. T. Nguyen, A. Napuli, L. Barrett, G. W. Buchko, R. Stacy, P. J. Myler, L. J. Stewart, C. Manoil W. C. Van Voorhis
Combining Functional And Structural Genomics To Sample The Essential Burkholderia Structome.
Plos One V. 8 53851 2013
PubMed-ID: 23382856  |  Reference-DOI: 10.1371/JOURNAL.PONE.0053851

(-) Compounds

Molecule 1 - FERREDOXIN--NADP REDUCTASE
    ChainsA, B
    EC Number1.18.1.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidAVA0421
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneBTH_I0211
    Organism ScientificBURKHOLDERIA THAILANDENSIS
    Organism Taxid271848
    StrainE264 / ATCC 700388 / DSM 13276 / CIP 106301

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:52 , ARG A:66 , ALA A:67 , TYR A:68 , SER A:69 , PHE A:82 , SER A:83 , ILE A:84 , VAL A:86 , GLY A:89 , PRO A:90 , LEU A:91 , THR A:92 , THR A:132 , ALA A:135 , ARG A:267 , ALA A:268 , PHE A:269 , VAL A:270 , ASP A:271 , HOH A:401 , HOH A:438 , HOH A:439 , HOH A:458 , HOH A:510 , HOH A:511 , GLU B:227BINDING SITE FOR RESIDUE FAD A 301
2AC2SOFTWAREPHE B:52 , ARG B:66 , ALA B:67 , TYR B:68 , SER B:69 , PHE B:82 , SER B:83 , ILE B:84 , VAL B:86 , GLY B:89 , PRO B:90 , LEU B:91 , THR B:92 , THR B:132 , ALA B:135 , ARG B:267 , ALA B:268 , PHE B:269 , VAL B:270 , HOH B:404 , HOH B:415 , HOH B:447 , HOH B:489BINDING SITE FOR RESIDUE FAD B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FK8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FK8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FK8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FK8)

(-) Exons   (0, 0)

(no "Exon" information available for 4FK8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d4fk8a1 A:18-115 automated matches                                                                d4fk8a2 A:116-271 automated matches                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee..eeeeee............eeeeeeee..eeeeeeee.........eeeeee......hhhhhh......eeeee.......hhhhh....eeeeee.hhhhhhhhhhh.hhhhhhhh.eeeeee...hhhhhhhhhhhhh......hhhhhhhhheeeee...hhhhhhhhhhhhhhhh.........eeeeeeehhhhhhhhhhhhhhh............eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fk8 A  18 KFDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNYEEHLEFFSIKVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKDTTELLKKAGLVEGKNSAPGHYVIERAFVD 271
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       204       214       224       234       244       254       264       
                                                                                                                                                                                                           195|                                                                    
                                                                                                                                                                                                            203                                                                    

Chain B from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains d4fk8b1 B:17-115 automated matches                                                                 d4fk8b2 B:116-271 automated matches                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee..eeeeee............eeeeeeee..eeeeeeee.........eeeeee......hhhhhh......eeeee.......hhhhh....eeeeee.hhhhhhhhhhh.hhhhhhhh.eeeeee...hhhhhhhhhhhhhh.....hhhhhhhhheeeee...hhhhhhhhhhhhhhh........eeeeeeehhhhhhhhhhhhhhh............eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fk8 B  17 SKFDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNYEEHLEFFSIKVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKDTTELLKKAGLVEGKNSAPGHYVIERAFVD 271
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       205       215       225       235       245       255       265      
                                                                                                                                                                                                            195|                                                                  
                                                                                                                                                                                                             205                                                                  

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FK8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FK8)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2T230_BURTA | Q2T2304f7d

(-) Related Entries Specified in the PDB File

4f7d APO FORM OF SAME PROTEIN RELATED ID: BUTHA.00101.A RELATED DB: TARGETTRACK