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(-) Description

Title :  CRYSTAL STRUCTURE OF ORFX IN COMPLEX WITH S-ADENOSYLMETHIONINE
 
Authors :  M. K. Safo, F. N. Musayev, S. Boundy, G. L. Archer, J. P. Rife, H. C. O'Farr
Date :  22 May 12  (Deposition) - 06 Jun 12  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Alpha/Beta Methyltransferase Rossmann Fold, Rrna Methylation, Adomet, Rrna, Transferase, Ribosomal Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Boundy, M. K. Safo, L. Wang, F. N. Musayev, H. C. O'Farrell, J. P. Rife G. L. Archer
Characterization Of The Staphylococcus Aureus Rrna Methyltransferase Encoded By Orfx, The Gene Containing The Staphylococcal Chromosome Cassette Mec (Sccmec) Insertion Site.
J. Biol. Chem. V. 288 132 2013
PubMed-ID: 23150671  |  Reference-DOI: 10.1074/JBC.M112.385138

(-) Compounds

Molecule 1 - RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE H
    Chains: A
    EC Number: 2.1.1.177
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Taxid: 562
    Gene: ORFX, RLMH
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280
    Strain: RN450M
    Synonym: 23S RRNA (PSEUDOURIDINE1915-N3)-METHYLTRANSFERASE, 23S RRNA M3PSI1915 METHYLTRANSFERASE, RRNA (PSEUDOURIDINE-N3-)- METHYLTRANSFERASE RLMH

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1PG41Ligand/IonTETRAETHYLENE GLYCOL
2PO41Ligand/IonPHOSPHATE ION
3SAM1Ligand/IonS-ADENOSYLMETHIONINE
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1PG42Ligand/IonTETRAETHYLENE GLYCOL
2PO42Ligand/IonPHOSPHATE ION
3SAM2Ligand/IonS-ADENOSYLMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:76 , GLU A:77 , ILE A:78 , ILE A:107 , GLY A:108 , GLY A:109 , SER A:110 , GLY A:112 , LEU A:125 , PHE A:127 , SER A:128 , MET A:130 , PHE A:132 , MET A:137 , LYS A:159 , PO4 A:203 , HOH A:308 , HOH A:322 , HOH A:382 , HOH A:462BINDING SITE FOR RESIDUE SAM A 201
2AC2SOFTWAREPRO A:69 , GLN A:119 , ARG A:120 , ASN A:122BINDING SITE FOR RESIDUE PG4 A 202
3AC3SOFTWARESER A:110 , PRO A:133 , HIS A:134 , LYS A:159 , SAM A:201 , HOH A:398 , HOH A:463BINDING SITE FOR RESIDUE PO4 A 203

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains d4faka_ A: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee....hhhhhhhhhhhhhhhh...eeeeeee.........hhhhhhhhhhhhhhhhhhh.....eeeee....ee.hhhhhhhhhhhhhhh...eeeeee......hhhhhhhh.eeee......hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fak A  -3 AAEFMKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK 159
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FAK)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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        RLMH_STAAU | P0C1V0: 1vh0

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