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(-) Description

Title :  CRYSTAL STRUCTURES REVEAL THE MULTI-LIGAND BINDING MECHANISM OF THE STAPHYLOCOCCUS AUREUS CLFB
 
Authors :  M. J. Yang, H. Xiang, J. W. Wang, B. Liu, Y. G. Chen, L. Liu, X. M. Deng, Y. Fe
Date :  07 May 12  (Deposition) - 08 Aug 12  (Release) - 08 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.51
Chains :  Asym./Biol. Unit :  A
Keywords :  Dev-Igg Fold, Cell Adhesion, Ck10, Cell Surface (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Xiang, Y. Feng, J. W. Wang, B. Liu, Y. G. Chen, L. Liu, X. M. Deng, M. J. Yang
Crystal Structures Reveal The Multi-Ligand Binding Mechanis Of Staphylococcus Aureus Clfb
Plos Pathog. V. 8 02751 2012
PubMed-ID: 22719251  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1002751

(-) Compounds

Molecule 1 - CLUMPING FACTOR B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 197-542
    Gene: CLFB, SAR2709
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 282458
    Strain: MRSA252
    Synonym: FIBRINOGEN RECEPTOR B, FIBRINOGEN-BINDING PROTEIN B

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1MG5Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:382 , THR A:383 , GLY A:386 , GLN A:387 , ASN A:388 , TYR A:493BINDING SITE FOR RESIDUE MG A 601
2AC2SOFTWAREASN A:370 , ASN A:508 , ILE A:509 , ASP A:516 , SER A:518BINDING SITE FOR RESIDUE MG A 602
3AC3SOFTWARETYR A:468 , TYR A:470 , ASP A:471BINDING SITE FOR RESIDUE MG A 603
4AC4SOFTWAREASN A:216 , VAL A:219 , ALA A:347BINDING SITE FOR RESIDUE MG A 604
5AC5SOFTWAREASN A:405 , THR A:406 , TRP A:407 , ASN A:477 , GLY A:479BINDING SITE FOR RESIDUE MG A 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F24)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F24)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F24)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F24)

(-) Exons   (0, 0)

(no "Exon" information available for 4F24)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeeeeee...eehhhhh..eeeeeeeee........eeeee....ee....eehhhhh.eeeeeeee.....eeeeeeee....eeeeee.hhhh.....eeeeeeeeee........eeee..eee..eee..eeee................eeeeeeeee......eeeeeeee......eeeeeeeee....hhhhh.ee......eeeeeee.hhhhh............eee.hhhhh..ee.....eeeeeeeee...eeeeeeeee......eeeeeeeeee........eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f24 A 201 AEPVVNAADAKGTNVNDKVTASDFKLEKTAFDPNQSGNTFMAANFKVTGQVKSGDYFTAKLPDSVTGNGDVDYSNSNNTMPIADIKSTNGDVVAKATYDILTKTYTFVFTDYVNDKENINGQFSLPLFTDRAKAPKSGTYDANINIADEMFDNKITYNYSSPIAGIDKPNGANISSQIIGVDTASGQNTYKQTVFVNPKQRVLGNTWVYIKGYQDKIEESSGKVSATDTKLRIFEVNDTSKLSDSYYADPNDSNLKEVTGEFKDKISYKYDNVASINFGDINKTYVVLVEGHYDNTGKNLKTQVIQENIDPATGKDYSIFGWNNENVVRYGGGS 534
                                   210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4F24)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F24)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F24)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLFB_STAAR | Q6GDH2: 4f1z 4f20 4f27

(-) Related Entries Specified in the PDB File

4f1z 4f20 4f27