4F03 - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE GLUTATHIONE TRANSFERASE GTE1 FROM PHANEROCHAETE CHRYSOSPORIUM

Authors :   C. Didierjean, F. Favier, P. Prosper

Date :   03 May 12 (Deposition) - 26 Sep 12 (Release) - 28 Nov 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Gst Fold, Glutathione, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Mathieu, P. Prosper, M. Buee, S. Dumarcay, F. Favier, E. Gelhaye, P. Gerardin, L. Harvengt, J. P. Jacquot, T. Lamant, E. Meux, S. Mathiot C. Didierjean, M. Morel
Characterization Of A Phanerochaete Chrysosporium Glutathione Transferase Reveals A Novel Structural And Functional Class With Ligandin Properties.
J. Biol. Chem. V. 287 39001 2012
PubMed-ID: 23007392 | Reference-DOI: 10.1074/JBC.M112.402776

Molecule 1 - GLUTATHIONE TRANSFERASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	PHANEROCHAETE CHRYSOSPORIUM
	Organism Taxid	:	5306

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 15)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 7)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 8)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:46 , PHE A:130 , ARG A:153 , HOH A:405 , HOH A:494	BINDING SITE FOR RESIDUE SO4 A 301
2	AC2	SOFTWARE	LEU A:132 , ASP A:136 , ALA A:165 , TRP A:220 , LYS A:226 , HOH A:562 , HOH A:574 , HOH A:577	BINDING SITE FOR RESIDUE GOL A 302
3	AC3	SOFTWARE	TYR B:46 , PHE B:130 , ARG B:153 , HOH B:564 , HOH B:609	BINDING SITE FOR RESIDUE SO4 B 301
4	AC4	SOFTWARE	TYR C:46 , PHE C:130 , PHE C:149 , ARG C:153	BINDING SITE FOR RESIDUE SO4 C 301
5	AC5	SOFTWARE	TYR D:46 , PHE D:130 , ARG D:153 , HOH D:665	BINDING SITE FOR RESIDUE SO4 D 301
6	AC6	SOFTWARE	LEU D:132 , ASP D:136 , ALA D:165 , TRP D:220 , LYS D:226 , HOH D:419 , HOH D:439 , HOH D:607	BINDING SITE FOR RESIDUE GOL D 302
7	AC7	SOFTWARE	ASN C:191 , MSE C:196 , GLY C:197 , ALA D:108 , GLY D:109 , HOH D:409 , HOH D:482 , HOH D:641	BINDING SITE FOR RESIDUE GOL D 303

(no "SS Bond" information available for 4F03)

Asymmetric Unit

No.	Residues
1	Leu A:73	-	Pro A:74
2	Leu B:73	-	Pro B:74
3	Leu C:73	-	Pro C:74
4	Leu D:73	-	Pro D:74

(no "SAP(SNP)/Variant" information available for 4F03)

(no "PROSITE Motif" information available for 4F03)

(no "Exon" information available for 4F03)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhh....hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh....ee.....ee....eeee....eeeehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f03 A   2 AQPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDETYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFmLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGLAKLKGYLDANGKGNDLLLmGAQGGITYSDIQIASFFVWAKIIWGEGSEKWKRLISLHDGKWAQFYAQFTKFEQVD 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    |  201       211       221       231       241       251 
                                                                                                                                                           131-MSE                                                          196-MSE

Chain B from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhh....hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh....ee.....ee....eeee....eeeehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f03 B   2 AQPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDETYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFmLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGLAKLKGYLDANGKGNDLLLmGAQGGITYSDIQIASFFVWAKIIWGEGSEKWKRLISLHDGKWAQFYAQFTKFEQV 251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    |  201       211       221       231       241       251
                                                                                                                                                           131-MSE                                                          196-MSE

Chain C from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhh....hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhh..................eee......eeehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f03 C   2 AQPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDETYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFmLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGLAKLKGYLDANGKGNDLLLmGAQGGITYSDIQIASFFVWAKIIWGEGSEKWKRLISLHDGKWAQFYAQFTKFEQV 251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    |  201       211       221       231       241       251
                                                                                                                                                           131-MSE                                                          196-MSE

Chain D from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhh....hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh....ee.....ee....eeee....eeeehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f03 D   2 AQPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDETYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFmLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGLAKLKGYLDANGKGNDLLLmGAQGGITYSDIQIASFFVWAKIIWGEGSEKWKRLISLHDGKWAQFYAQFTKFEQVD 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    |  201       211       221       231       241       251 
                                                                                                                                                           131-MSE                                                          196-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4F03)

(no "CATH Domain" information available for 4F03)

(no "Pfam Domain" information available for 4F03)

Asymmetric Unit(hide GO term definitions)

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Leu A:73 - Pro A:74	[ RasMol ]
		Leu B:73 - Pro B:74	[ RasMol ]
		Leu C:73 - Pro C:74	[ RasMol ]
		Leu D:73 - Pro D:74	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 15)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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