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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GLUTATHIONE TRANSFERASE GTE1 FROM PHANEROCHAETE CHRYSOSPORIUM IN COMPLEX WITH GLUTATHIONE
 
Authors :  C. Didierjean, F. Favier, P. Prosper
Date :  10 Jul 12  (Deposition) - 26 Sep 12  (Release) - 28 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Gst Fold, Glutathione, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Mathieu, P. Prosper, M. Buee, S. Dumarcay, F. Favier, E. Gelhaye, P. Gerardin, L. Harvengt, J. P. Jacquot, T. Lamant, E. Meux, S. Mathiot C. Didierjean, M. Morel
Characterization Of A Phanerochaete Chrysosporium Glutathione Transferase Reveals A Novel Structural And Functional Class With Ligandin Properties.
J. Biol. Chem. V. 287 39001 2012
PubMed-ID: 23007392  |  Reference-DOI: 10.1074/JBC.M112.402776

(-) Compounds

Molecule 1 - GLUTATHIONE TRANSFERASE GTE1
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PHANEROCHAETE CHRYSOSPORIUM
    Organism Taxid: 5306

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric Unit (3, 17)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2GOL7Ligand/IonGLYCEROL
3GSH4Ligand/IonGLUTATHIONE
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2GOL4Ligand/IonGLYCEROL
3GSH2Ligand/IonGLUTATHIONE
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2GOL3Ligand/IonGLYCEROL
3GSH2Ligand/IonGLUTATHIONE

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:24 , TYR A:46 , PHE A:130 , ARG A:153 , GSH A:302 , HOH A:575BINDING SITE FOR RESIDUE ACT A 301
02AC2SOFTWAREILE A:10 , SER A:22 , ASN A:24 , TYR A:46 , ILE A:49 , HIS A:70 , THR A:72 , LEU A:73 , PRO A:74 , ASP A:87 , SER A:88 , TYR A:148 , ARG A:153 , ACT A:301 , HOH A:447 , HOH A:496 , HOH A:569 , HOH A:578BINDING SITE FOR RESIDUE GSH A 302
03AC3SOFTWARELEU A:132 , ASP A:136 , ALA A:165 , TRP A:220 , LYS A:226 , HOH A:501 , HOH A:510BINDING SITE FOR RESIDUE GOL A 303
04AC4SOFTWAREALA A:2 , GLN A:3 , LEU A:37 , LYS A:38BINDING SITE FOR RESIDUE ACT A 304
05AC5SOFTWAREALA A:108 , GLY A:109 , THR A:110 , ASP A:111 , ASN B:187 , ASN B:191BINDING SITE FOR RESIDUE GOL A 305
06AC6SOFTWARETYR B:46 , PHE B:130 , ARG B:153 , GSH B:302 , HOH B:535BINDING SITE FOR RESIDUE ACT B 301
07AC7SOFTWAREILE B:10 , SER B:22 , ASN B:24 , TYR B:46 , ILE B:49 , HIS B:70 , TYR B:71 , THR B:72 , LEU B:73 , PRO B:74 , ASP B:87 , SER B:88 , TYR B:148 , ARG B:153 , ACT B:301 , HOH B:412 , HOH B:433 , HOH B:537BINDING SITE FOR RESIDUE GSH B 302
08AC8SOFTWARELEU B:132 , ASP B:136 , ALA B:165 , TRP B:220 , LYS B:226 , HOH B:430 , HOH B:439 , HOH B:543BINDING SITE FOR RESIDUE GOL B 303
09AC9SOFTWAREASN A:187 , ASN A:191 , LEU A:195 , MET A:196 , ALA B:108 , GLY B:109 , THR B:110 , ASP B:111BINDING SITE FOR RESIDUE GOL B 304
10BC1SOFTWARETYR C:46 , TRP C:122 , PHE C:130 , ARG C:153 , GSH C:302 , HOH C:512BINDING SITE FOR RESIDUE ACT C 301
11BC2SOFTWAREILE C:10 , SER C:22 , ASN C:24 , TYR C:46 , ILE C:49 , HIS C:70 , TYR C:71 , THR C:72 , LEU C:73 , PRO C:74 , ASP C:87 , SER C:88 , TYR C:148 , ARG C:153 , ACT C:301 , HOH C:462 , HOH C:493 , HOH C:511BINDING SITE FOR RESIDUE GSH C 302
12BC3SOFTWAREPRO C:107 , ALA C:108 , MET C:196 , ALA D:108 , MET D:196BINDING SITE FOR RESIDUE GOL D 301
13BC4SOFTWARETYR D:46 , PHE D:130 , PHE D:149 , ARG D:153 , GSH D:303BINDING SITE FOR RESIDUE ACT D 302
14BC5SOFTWAREILE D:10 , SER D:22 , ASN D:24 , TYR D:46 , ILE D:49 , HIS D:70 , TYR D:71 , THR D:72 , LEU D:73 , PRO D:74 , ASP D:87 , SER D:88 , TYR D:148 , ARG D:153 , ACT D:302 , HOH D:450 , HOH D:453 , HOH D:572 , HOH D:582 , HOH D:592BINDING SITE FOR RESIDUE GSH D 303
15BC6SOFTWARELEU D:132 , ASP D:136 , ALA D:165 , TRP D:220 , LYS D:226 , HOH D:415 , HOH D:433BINDING SITE FOR RESIDUE GOL D 304
16BC7SOFTWAREALA D:2 , GLN D:3 , LYS D:38BINDING SITE FOR RESIDUE ACT D 305
17BC8SOFTWAREPRO A:143 , ASP A:147 , LYS D:104 , HOH D:404 , HOH D:411BINDING SITE FOR RESIDUE GOL D 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G19)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:73 -Pro A:74
2Leu B:73 -Pro B:74
3Leu C:73 -Pro C:74
4Leu D:73 -Pro D:74

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G19)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G19)

(-) Exons   (0, 0)

(no "Exon" information available for 4G19)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhh....hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh....ee.....ee....eee......eeehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g19 A   2 AQPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDETYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFMLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGLAKLKGYLDANGKGNDLLLMGAQGGITYSDIQIASFFVWAKIIWGEGSEKWKRLISLHDGKWAQFYAQFTKFEQVD 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 


Chain B from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhh....hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh....ee.....ee....eeee....eeeehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g19 B   2 AQPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDETYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFMLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGLAKLKGYLDANGKGNDLLLMGAQGGITYSDIQIASFFVWAKIIWGEGSEKWKRLISLHDGKWAQFYAQFTKFEQV 251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251


Chain C from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhh....hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh....ee.....ee....eeee....eeeehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g19 C   2 AQPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDETYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFMLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGLAKLKGYLDANGKGNDLLLMGAQGGITYSDIQIASFFVWAKIIWGEGSEKWKRLISLHDGKWAQFYAQFTKFEQV 251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251


Chain D from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhh....hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh....ee.....ee....eeee....eeeehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g19 D   2 AQPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDETYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFMLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGLAKLKGYLDANGKGNDLLLMGAQGGITYSDIQIASFFVWAKIIWGEGSEKWKRLISLHDGKWAQFYAQFTKFEQVD 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G19)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G19)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G19)

(-) Gene Ontology  (1, 1)

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        I6ZUH3_PHACH | I6ZUH3: 4f03

(-) Related Entries Specified in the PDB File

4f03