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(-) Description

Title :  CRYSTAL STRUCTURE OF MAPK13 AT INACTIVE FORM
 
Authors :  C. A. Miller, T. J. Brett
Date :  10 Mar 15  (Deposition) - 08 Apr 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  P38 Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. G. Alevy, A. C. Patel, A. G. Romero, D. A. Patel, J. Tucker, W. T. Roswit, C. A. Miller, R. F. Heier, D. E. Byers, T. J. Brett, M. J. Holtzman
Il-13-Induced Airway Mucus Production Is Attenuated By Mapk13 Inhibition.
J. Clin. Invest. V. 122 4555 2012
PubMed-ID: 23187130  |  Reference-DOI: 10.1172/JCI64896
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 13
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: ROSETTA2 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MAPK13, PRKM13, SAPK4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAPK 13,MITOGEN-ACTIVATED PROTEIN KINASE P38 DELTA,MAP KINASE P38 DELTA,STRESS-ACTIVATED PROTEIN KINASE 4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4YNO)

(-) Sites  (0, 0)

(no "Site" information available for 4YNO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YNO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:268 -Asp A:269

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YNO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YNO)

(-) Exons   (0, 0)

(no "Exon" information available for 4YNO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:342
                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee..eeeeee..eeeeeeeee...eeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhh.........eee............eeeee...eehhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...............hhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh........hhhhh...hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yno A   2 SLIRKKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLAGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDPEEETEAQQPFDDSLEHEKLTVDEWKQHIYKEIVNFSP 351
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171||     189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349  
                                                                                                                                                                                                    172|                                                                                                                                                                          
                                                                                                                                                                                                     181
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 4EXU: 1,1)

(no "SCOP Domain" information available for 4YNO, only for superseded entry 4EXU replaced by 4YNO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YNO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YNO)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:268 - Asp A:269   [ RasMol ]  
 

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  4yno
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  MK13_HUMAN | O15264
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK13_HUMAN | O15264: 3coi 4eyj 4eym 4myg 5ekn 5eko

(-) Related Entries Specified in the PDB File

4eyj SAME PROTEIN IN COMPLEX WITH INHIBITOR
4eym SAME PROTEIN IN COMPLEX WITH INHIBITOR
4myg SAME PROTEIN, ACTIVE FORM