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(-) Description

Title :  MAPK13 COMPLEX WITH INHIBITOR
 
Authors :  C. A. Miller, T. J. Brett
Date :  01 May 12  (Deposition) - 19 Dec 12  (Release) - 19 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A
Keywords :  P38 Family Kinase, Map Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. G. Alevy, A. C. Patel, A. G. Romero, D. A. Patel, J. Tucker, W. T. Roswit, C. A. Miller, R. F. Heier, D. E. Byers, T. J. Brett, M. J. Holtzman
Il-13-Induced Airway Mucus Production Is Attenuated By Mapk13 Inhibition.
J. Clin. Invest. V. 122 4555 2012
PubMed-ID: 23187130  |  Reference-DOI: 10.1172/JCI64896

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 13
    ChainsA
    EC Number2.7.11.24
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainROSETTA2 (DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 1-352
    GeneMAPK13, PRKM13, SAPK4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMAP KINASE 13, MAPK 13, MITOGEN-ACTIVATED PROTEIN KINASE P38 DELTA, MAP KINASE P38 DELTA, STRESS-ACTIVATED PROTEIN KINASE 4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
10RX1Ligand/Ion2-(MORPHOLIN-4-YL)-N-[4-(PYRIDIN-4-YLOXY)PHENYL]PYRIDINE-4-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:39 , ALA A:52 , LYS A:54 , ARG A:68 , GLU A:72 , LEU A:76 , ILE A:85 , MET A:107 , PRO A:108 , MET A:110 , ASP A:168 , PHE A:169 , GLY A:170BINDING SITE FOR RESIDUE 0RX A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EYM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EYM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4eyma_ A: automated matches                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..eeeeee..eeeeeeeee...eeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhh.........eee............eeeee...eehhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.............hhhhhh.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhh.......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh................hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eym A   2 SLIRKKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDPEEETEAQQPFDDSLEHEKLTVDEWKQHIYKEIVNFSP 351
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171|      191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351
                                                                                                                                                                                                   171|                                                                                                                                                                         
                                                                                                                                                                                                    182                                                                                                                                                                         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EYM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EYM)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK13_HUMAN | O152643coi 4eyj 4myg 4yno 5ekn 5eko

(-) Related Entries Specified in the PDB File

4exu 4eyj