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(-) Description

Title :  STRUCTURE OF ATU4243-GABA SENSOR
 
Authors :  S. Morera, S. Planamente
Date :  25 Apr 12  (Deposition) - 21 Nov 12  (Release) - 19 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.28
Chains :  Asym./Biol. Unit :  A
Keywords :  Class D Of Pbp, Gaba-Binding, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Planamente, S. Mondy, F. Hommais, A. Vigouroux, S. Morera, D. Faure
Structural Basis For Selective Gaba Binding In Bacterial Pathogens.
Mol. Microbiol. V. 86 1085 2012
PubMed-ID: 23043322  |  Reference-DOI: 10.1111/MMI.12043

(-) Compounds

Molecule 1 - ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN (POLYAMINE)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ATU4243
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 176299
    Strain: C58 / ATCC 33970

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ABU1Ligand/IonGAMMA-AMINO-BUTANOIC ACID
2GOL3Ligand/IonGLYCEROL
3SO41Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:30 , THR A:60 , ASP A:61 , TYR A:62 , GLY A:63 , TYR A:157 , TRP A:159 , HOH A:575 , HOH A:857BINDING SITE FOR RESIDUE GOL A 401
2AC2SOFTWARELYS A:107 , ALA A:272 , ASN A:288 , HOH A:670 , HOH A:673BINDING SITE FOR RESIDUE GOL A 402
3AC3SOFTWAREARG A:111 , ILE A:289 , GLU A:290 , LYS A:293 , ASP A:305 , THR A:308 , HOH A:534 , HOH A:536 , HOH A:540 , HOH A:621 , HOH A:843BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWARETRP A:30 , THR A:34 , PHE A:121 , TRP A:222 , ARG A:225 , ASP A:248 , TYR A:284 , HOH A:563BINDING SITE FOR RESIDUE ABU A 404
5AC5SOFTWARELEU A:182 , ASP A:183 , LEU A:184 , ASP A:185 , ARG A:329 , HOH A:616 , HOH A:712 , HOH A:820 , HOH A:869BINDING SITE FOR RESIDUE SO4 A 405

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:129 -A:137

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:58 -Pro A:59
2Tyr A:180 -Pro A:181

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EUO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EUO)

(-) Exons   (0, 0)

(no "Exon" information available for 4EUO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh......eeeeehhhhhhhh.............hhhhhhhhhh....eeeeeeeeeeee.hhhh.....hhhhhh........eeee.....hhhhhhhhhh..hhhhh...hhhhhhhhhhhhhh.eeee.hhhhhhhhhhh....eeeeehhhhhhhhhh....eeeeeeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4euo A  24 DLVFSSWGGTTQDAQKAAWAEKFMVETGINVLQDGPTDYGKLKAMVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVIDKTKLDPRFVTDYSVGSFYYSFVIGCNVDSVSACPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATSAQAQADMATATGYAPVNIESAKLMDPKIAKSLPDQQTESQVNADMNYWAQHRDEIGERWYAWQAK 336
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EUO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EUO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EUO)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4EUO)

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  Cis Peptide Bonds
    Gly A:58 - Pro A:59   [ RasMol ]  
    Tyr A:180 - Pro A:181   [ RasMol ]  
 

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 Related Entries

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UniProtKB/TrEMBL
        A9CGA5_AGRFC | A9CGA5: 4eq7

(-) Related Entries Specified in the PDB File

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