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(-) Description

Title :  STRUCTURE OF ATU4243-GABA RECEPTOR
 
Authors :  S. Morera, S. Planamente
Date :  18 Apr 12  (Deposition) - 21 Nov 12  (Release) - 19 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Class D Of Pbp, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Planamente, S. Mondy, F. Hommais, A. Vigouroux, S. Morera, D. Faure
Structural Basis For Selective Gaba Binding In Bacterial Pathogens.
Mol. Microbiol. V. 86 1085 2012
PubMed-ID: 23043322  |  Reference-DOI: 10.1111/MMI.12043

(-) Compounds

Molecule 1 - ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN (POLYAMINE)
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ATU4243
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 176299
    Strain: C58 / ATCC 33970

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 28)

Asymmetric Unit (3, 28)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2MSE14Mod. Amino AcidSELENOMETHIONINE
3SO49Ligand/IonSULFATE ION
Biological Unit 1 (3, 14)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE7Mod. Amino AcidSELENOMETHIONINE
3SO45Ligand/IonSULFATE ION
Biological Unit 2 (3, 14)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE7Mod. Amino AcidSELENOMETHIONINE
3SO44Ligand/IonSULFATE ION
Biological Unit 3 (3, 28)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2MSE14Mod. Amino AcidSELENOMETHIONINE
3SO49Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:203 , GLY A:204 , ALA A:205 , GLN A:206 , HOH A:709 , HOH A:739 , HOH A:747 , HIS B:339 , HIS B:340 , HOH B:588 , HOH B:627BINDING SITE FOR RESIDUE SO4 A 401
02AC2SOFTWAREALA A:335 , LYS A:336 , HOH A:565 , HOH A:663 , LYS B:158BINDING SITE FOR RESIDUE SO4 A 402
03AC3SOFTWAREHIS A:340 , HOH A:619 , HOH A:658 , HOH A:716 , HOH A:748 , GLY B:31 , GLY B:32BINDING SITE FOR RESIDUE SO4 A 403
04AC4SOFTWAREVAL A:236 , GLU A:237 , THR A:238 , HOH A:704BINDING SITE FOR RESIDUE SO4 A 404
05AC5SOFTWAREHIS A:337 , HIS A:338 , HOH A:809BINDING SITE FOR RESIDUE SO4 A 405
06AC6SOFTWARELYS A:195 , ILE A:198 , TRP A:200 , GLN A:334BINDING SITE FOR RESIDUE GOL A 406
07AC7SOFTWAREASP A:324 , GLY A:327 , GLU A:328 , TYR A:331 , HOH A:528 , HOH A:591 , HOH A:627 , GLY B:327 , GLU B:328 , TYR B:331BINDING SITE FOR RESIDUE GOL A 407
08AC8SOFTWAREHIS A:339 , HIS A:340 , HOH A:535 , HOH A:585 , GLY B:203 , GLY B:204 , ALA B:205 , GLN B:206 , HOH B:665 , HOH B:717BINDING SITE FOR RESIDUE SO4 B 401
09AC9SOFTWARELYS A:158 , ALA B:335 , LYS B:336 , HOH B:571 , HOH B:664BINDING SITE FOR RESIDUE SO4 B 402
10BC1SOFTWARELYS B:92 , HOH B:556 , HOH B:583 , HOH B:812BINDING SITE FOR RESIDUE SO4 B 403
11BC2SOFTWAREHIS B:337 , HIS B:338BINDING SITE FOR RESIDUE SO4 B 404
12BC3SOFTWAREPHE B:100 , LYS B:105 , VAL B:113 , THR B:114 , ASP B:115 , THR B:308 , GLU B:309 , GLN B:311 , HOH B:661 , HOH B:772BINDING SITE FOR RESIDUE GOL B 405
13BC4SOFTWARELYS B:97 , SER B:310 , HOH B:530 , HOH B:640BINDING SITE FOR RESIDUE GOL B 406
14BC5SOFTWAREGLY A:32 , HOH A:756 , LYS B:39 , HIS B:340BINDING SITE FOR RESIDUE GOL B 407

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:129 -A:137
2B:129 -B:137

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:58 -Pro A:59
2Tyr A:180 -Pro A:181
3Gly B:58 -Pro B:59
4Tyr B:180 -Pro B:181

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EQ7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EQ7)

(-) Exons   (0, 0)

(no "Exon" information available for 4EQ7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:320
                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh......eeeeehhhhhhhh.............hhhhhhhhhh....eeeeeeeeeeeee.hhh.....hhhhhh........eeee.....hhhhhhhhhh..hhhhh...hhhhhhhhhhhhhh.eeee.hhhhhhhhhhh....eeeee.hhhhhhhhhh..eeeeeeeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eq7 A  23 NDLVFSSWGGTTQDAQKAAWAEKFmVETGINVLQDGPTDYGKLKAmVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVIDKTKLDPRFVTDYSVGSFYYSFVIGCNVDSVSACPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGRmTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAAmKFIALATSAQAQADmATATGYAPVNIESAKLmDPKIAKSLPDQQTESQVNADmNYWAQHRDEIGERWYAWQAKHHHHHH 342
                                    32        42    |   52        62     |  72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   |   232       242       252       262|      272     | 282       292  |    302       312   |   322       332       342
                                                   47-MSE               68-MSE                                                                                                                                                       226-MSE                              263-MSE        278-MSE          295-MSE              316-MSE                      


Chain B from PDB  Type:PROTEIN  Length:320
                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh......eeeeehhhhhhhh..................hhhhh....eeeeeeeeeeeee.hhh.....hhhhhh........eeee.....hhhhhhhhhh..hhhhh...hhhhhhhhhhhhhh.eeee.hhhhhhhhhhh....eeeeehhhhhhhhhh...eeeeeeeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eq7 B  23 NDLVFSSWGGTTQDAQKAAWAEKFmVETGINVLQDGPTDYGKLKAmVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVIDKTKLDPRFVTDYSVGSFYYSFVIGCNVDSVSACPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGRmTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAAmKFIALATSAQAQADmATATGYAPVNIESAKLmDPKIAKSLPDQQTESQVNADmNYWAQHRDEIGERWYAWQAKHHHHHH 342
                                    32        42    |   52        62     |  72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   |   232       242       252       262|      272     | 282       292  |    302       312   |   322       332       342
                                                   47-MSE               68-MSE                                                                                                                                                       226-MSE                              263-MSE        278-MSE          295-MSE              316-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EQ7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EQ7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EQ7)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4EQ7)

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        A9CGA5_AGRFC | A9CGA5: 4euo

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