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(-) Description

Title :  SUCCINYL-COA: ACETATE COA-TRANSFERASE (AARCH6) IN COMPLEX WITH COA (HEXAGONAL LATTICE)
 
Authors :  E. A. Mullins, T. J. Kappock
Date :  25 Apr 12  (Deposition) - 10 Oct 12  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Mullins, T. J. Kappock
Crystal Structures Of Acetobacter Aceti Succinyl-Coenzyme A (Coa):Acetate Coa-Transferase Reveal Specificity Determinants And Illustrate The Mechanism Used By Class I Coa-Transferases.
Biochemistry V. 51 8422 2012
PubMed-ID: 23030530  |  Reference-DOI: 10.1021/BI300957F
(for further references see the PDB file header)

(-) Compounds

Molecule 1
    Chains: A, B
    EC Number: 2.8.3.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A
    Expression System Strain: C41(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AARC
    Organism Scientific: ACETOBACTER ACETI
    Organism Taxid: 435
    Strain: 1023

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 26)

Asymmetric/Biological Unit (3, 26)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2COA2Ligand/IonCOENZYME A
3SO420Ligand/IonSULFATE ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:269 , VAL A:270 , VAL A:273 , GLU A:294 , ASN A:361 , MET A:363 , ILE A:364 , SER A:374 , VAL A:377 , MET A:383 , ASN A:384 , GLY A:385 , ILE A:386 , SER A:389 , ALA A:407 , LYS A:408 , ILE A:412 , HOH A:518 , HOH A:544 , HOH A:547 , HOH A:550 , HOH A:616 , HOH A:653 , SO4 A:818BINDING SITE FOR RESIDUE COA A 2598
02AC2SOFTWAREARG A:200BINDING SITE FOR RESIDUE SO4 A 816
03AC3SOFTWAREHIS A:252 , GLN A:256 , ARG A:258BINDING SITE FOR RESIDUE SO4 A 817
04AC4SOFTWAREALA A:407 , LYS A:408 , GLY A:409 , COA A:2598BINDING SITE FOR RESIDUE SO4 A 818
05AC5SOFTWAREPRO A:460 , ARG A:463BINDING SITE FOR RESIDUE SO4 A 819
06AC6SOFTWARETHR A:2 , ARG A:4 , PRO A:174BINDING SITE FOR RESIDUE SO4 A 823
07AC7SOFTWAREARG A:11BINDING SITE FOR RESIDUE SO4 A 824
08AC8SOFTWAREMET A:175 , ARG A:335BINDING SITE FOR RESIDUE SO4 A 829
09AC9SOFTWAREARG A:101BINDING SITE FOR RESIDUE SO4 A 830
10BC1SOFTWARETRP A:171 , ARG A:226BINDING SITE FOR RESIDUE SO4 A 832
11BC2SOFTWAREARG A:6 , THR A:140 , GLU A:141 , ASP A:142BINDING SITE FOR RESIDUE SO4 A 834
12BC3SOFTWAREASN A:112 , ARG A:120 , ASN A:125 , GLY B:443BINDING SITE FOR RESIDUE CL A 515
13BC4SOFTWAREVAL A:196 , ARG A:354 , HOH A:614 , HOH B:755BINDING SITE FOR RESIDUE CL A 516
14BC5SOFTWAREGLY B:269 , VAL B:270 , GLY B:271 , VAL B:273 , GLU B:294 , ILE B:364 , SER B:374 , VAL B:377 , MET B:383 , ASN B:384 , GLY B:385 , ILE B:386 , SER B:389 , ALA B:407 , LYS B:408 , ILE B:412 , HOH B:518 , HOH B:707 , HOH B:726 , HOH B:790 , HOH B:794 , SO4 B:826BINDING SITE FOR RESIDUE COA B 2598
15BC6SOFTWARETHR B:2 , ARG B:4 , PRO B:174BINDING SITE FOR RESIDUE SO4 B 820
16BC7SOFTWAREVAL B:8 , ARG B:11BINDING SITE FOR RESIDUE SO4 B 821
17BC8SOFTWAREARG B:101BINDING SITE FOR RESIDUE SO4 B 822
18BC9SOFTWAREARG B:200BINDING SITE FOR RESIDUE SO4 B 825
19CC1SOFTWAREALA B:407 , LYS B:408 , COA B:2598BINDING SITE FOR RESIDUE SO4 B 826
20CC2SOFTWAREHIS B:252 , GLN B:256 , ARG B:258BINDING SITE FOR RESIDUE SO4 B 827
21CC3SOFTWAREPRO B:460 , ARG B:463BINDING SITE FOR RESIDUE SO4 B 828
22CC4SOFTWAREMET B:175 , ARG B:335BINDING SITE FOR RESIDUE SO4 B 831
23CC5SOFTWARETRP B:171 , ARG B:226BINDING SITE FOR RESIDUE SO4 B 833
24CC6SOFTWAREARG B:6 , THR B:140 , GLU B:141 , ASP B:142BINDING SITE FOR RESIDUE SO4 B 835
25CC7SOFTWAREGLY A:443 , ASN B:112 , ARG B:120 , ASN B:125BINDING SITE FOR RESIDUE CL B 515
26CC8SOFTWAREVAL B:196 , ARG B:354BINDING SITE FOR RESIDUE CL B 516

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EU4)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:90 -Pro A:91
2Pro A:191 -Thr A:192
3Ser B:90 -Pro B:91
4Pro B:191 -Thr B:192

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EU4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EU4)

(-) Exons   (0, 0)

(no "Exon" information available for 4EU4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:504
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4eu4a1 A:2-229 automated matches                                                                                                                                                                                                   d4eu4a2 A:230-505 automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhh.hhhhhhh......eeee.........hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhhh......eeeeee.ee.....ee......hhhhhhhhh.eeeeeee...hhhhh..ee...............................hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhh.........eee...hhhhhhhhhhhhh....eeee..eehhhhhhhhhhh.eeeeee.ee..hhhhhhhhhhhhhhhhh.eeeehhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh.eeeee...ee....ee.ee........hhhhh.eee....eee....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh............hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4eu4 A   2 TERIRNVALRSKVCPAETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQTFLNLAEKVIIEVNEWQNPMLEGIHDIWDGNVSGVPTRDIVPIVRADQRVGGPVLRVNPDKIAAIVRTNDRDRNAPFAAPDETAKAIAGYLLDFFGHEVKQNRLPPSLLPLQSGVGNVANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNRMDFFRSKIILRQQDVSNSPGIIRRLGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIGGSGDFARSSYLSIFLSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQDYFDRALKNSFGKHTPHLLTEALSWHQRFIDTGTMLPS 505
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501    


Chain B from PDB  Type:PROTEIN  Length:504
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4eu4b1 B:2-229 automated matches                                                                                                                                                                                                   d4eu4b2 B:230-505 automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhh.hhhhhhh......eeee.........hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhhh......eeeeee.ee.....ee......hhhhhhhhh.eeeeeee...hhhhh..ee...............................hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhh.........eee...hhhhhhhhhhhhh....eeee..eehhhhhhhhhhh.eeeeee.ee..hhhhhhhhhhhhhhhhh.eeeehhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh.eeeee...ee....ee.ee........hhhhh.eee....eee....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh............hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4eu4 B   2 TERIRNVALRSKVCPAETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQTFLNLAEKVIIEVNEWQNPMLEGIHDIWDGNVSGVPTRDIVPIVRADQRVGGPVLRVNPDKIAAIVRTNDRDRNAPFAAPDETAKAIAGYLLDFFGHEVKQNRLPPSLLPLQSGVGNVANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNRMDFFRSKIILRQQDVSNSPGIIRRLGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIGGSGDFARSSYLSIFLSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQDYFDRALKNSFGKHTPHLLTEALSWHQRFIDTGTMLPS 505
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EU4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EU4)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCACT_ACEAC | B3EY95: 4eu3 4eu5 4eu6 4eu7 4eu8 4eu9 4eua 4eub 4euc 4eud 5ddk 5dw4 5dw5 5dw6 5e5h

(-) Related Entries Specified in the PDB File

4eu3 4eu5 4eu6 4eu7 4eu8 4eu9 4eua 4eub 4euc 4eud