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(-) Description

Title :  SUCCINYL-COA:ACETATE COA-TRANSFERASE (AARCH6-E294A) IN COMPLEX WITH COA
 
Authors :  E. A. Mullins, T. J. Kappock
Date :  25 Apr 12  (Deposition) - 10 Oct 12  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.97
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Mullins, T. J. Kappock
Crystal Structures Of Acetobacter Aceti Succinyl-Coenzyme A (Coa):Acetate Coa-Transferase Reveal Specificity Determinants And Illustrate The Mechanism Used By Class I Coa-Transferases.
Biochemistry V. 51 8422 2012
PubMed-ID: 23030530  |  Reference-DOI: 10.1021/BI300957F
(for further references see the PDB file header)

(-) Compounds

Molecule 1
    Chains: A, B
    EC Number: 2.8.3.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A
    Expression System Strain: C41(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AARC
    Mutation: YES
    Organism Scientific: ACETOBACTER ACETI
    Organism Taxid: 435
    Strain: 1023

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2COA2Ligand/IonCOENZYME A

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:267 , VAL A:270 , GLY A:271 , ASN A:272 , VAL A:273 , ASN A:361 , MET A:363 , ILE A:364 , MET A:383 , ASN A:384 , GLY A:385 , ILE A:386 , GLY A:388 , SER A:389 , ALA A:407 , ILE A:412 , HOH A:517 , HOH A:518 , HOH A:527 , HOH A:530 , HOH A:566 , HOH A:569 , HOH A:585 , HOH A:593 , HOH A:598 , HOH A:605 , HOH A:645 , HOH A:653 , HOH A:683 , HOH A:789 , HOH A:812 , HOH A:868 , HOH A:1166 , HOH A:1231 , HOH A:1256 , LYS B:240BINDING SITE FOR RESIDUE COA A 2598
2AC2SOFTWAREASN A:112 , ARG A:120 , ASN A:125 , HOH A:1168 , GLY B:443BINDING SITE FOR RESIDUE CL A 515
3AC3SOFTWAREVAL A:196 , ARG A:354 , HOH A:858 , ARG B:354BINDING SITE FOR RESIDUE CL A 516
4AC4SOFTWAREGLN B:267 , VAL B:270 , GLY B:271 , ASN B:272 , VAL B:273 , ASN B:361 , MET B:363 , ILE B:364 , MET B:383 , ASN B:384 , GLY B:385 , ILE B:386 , SER B:389 , ALA B:407 , LYS B:408 , HOH B:518 , HOH B:531 , HOH B:553 , HOH B:573 , HOH B:574 , HOH B:582 , HOH B:584 , HOH B:608 , HOH B:631 , HOH B:639 , HOH B:652 , HOH B:726 , HOH B:743 , HOH B:748 , HOH B:797 , HOH B:954 , HOH B:1092 , HOH B:1165 , HOH B:1227BINDING SITE FOR RESIDUE COA B 2598
5AC5SOFTWAREGLY A:443 , HOH A:695 , ASN B:112 , ARG B:120 , ASN B:125BINDING SITE FOR RESIDUE CL B 515
6AC6SOFTWAREVAL B:196 , ARG B:354 , HOH B:744BINDING SITE FOR RESIDUE CL B 516

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EUB)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:90 -Pro A:91
2Pro A:191 -Thr A:192
3Ser B:90 -Pro B:91
4Pro B:191 -Thr B:192

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EUB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EUB)

(-) Exons   (0, 0)

(no "Exon" information available for 4EUB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:504
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4euba1 A:2-229 automated matches                                                                                                                                                                                                   d4euba2 A:230-505 automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhh.hhhhhhh......eeee.........hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhhh......eeeeee.ee.....ee......hhhhhhhhh.eeeeeee...hhhhh..ee...............................hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhhh......eeee..eehhhhhhhhhhh.eeeeee.ee..hhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh.eeeee...ee....ee.ee........hhhhh.eeee..eeee....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh............hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4eub A   2 TERIRNVALRSKVCPAETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQTFLNLAEKVIIEVNEWQNPMLEGIHDIWDGNVSGVPTRDIVPIVRADQRVGGPVLRVNPDKIAAIVRTNDRDRNAPFAAPDETAKAIAGYLLDFFGHEVKQNRLPPSLLPLQSGVGNVANAVLEGLKEGPFENLVGYSAVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNRMDFFRSKIILRQQDVSNSPGIIRRLGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIGGSGDFARSSYLSIFLSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQDYFDRALKNSFGKHTPHLLTEALSWHQRFIDTGTMLPS 505
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501    


Chain B from PDB  Type:PROTEIN  Length:504
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4eubb1 B:2-229 automated matches                                                                                                                                                                                                   d4eubb2 B:230-505 automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhh.hhhhhhh......eeee.........hhhhhhhhhhhhhhhhh.....eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhhh......eeeeee.ee.....ee......hhhhhhhhh.eeeeeee...hhhhh..ee...............................hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhhh......eeee..eehhhhhhhhhh..eeeeee.ee..hhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh.eeeee...eehhhhee.ee........hhhhh.eeee..eeee....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh............hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4eub B   2 TERIRNVALRSKVCPAETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQTFLNLAEKVIIEVNEWQNPMLEGIHDIWDGNVSGVPTRDIVPIVRADQRVGGPVLRVNPDKIAAIVRTNDRDRNAPFAAPDETAKAIAGYLLDFFGHEVKQNRLPPSLLPLQSGVGNVANAVLEGLKEGPFENLVGYSAVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNRMDFFRSKIILRQQDVSNSPGIIRRLGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIGGSGDFARSSYLSIFLSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQDYFDRALKNSFGKHTPHLLTEALSWHQRFIDTGTMLPS 505
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EUB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EUB)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCACT_ACEAC | B3EY95: 4eu3 4eu4 4eu5 4eu6 4eu7 4eu8 4eu9 4eua 4euc 4eud 5ddk 5dw4 5dw5 5dw6 5e5h

(-) Related Entries Specified in the PDB File

4eu3 4eu4 4eu5 4eu6 4eu7 4eu8 4eu9 4eua 4euc 4eud