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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PESTICIN FROM YERSINIA PESTIS
 
Authors :  P. Lukacik, T. J. Barnard, S. K. Buchanan
Date :  17 Apr 12  (Deposition) - 20 Jun 12  (Release) - 04 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Bacterial Toxin, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Lukacik, T. J. Barnard, P. W. Keller, K. S. Chaturvedi, N. Seddiki, J. W. Fairman, N. Noinaj, T. L. Kirby, J. P. Henderson, A. C. Steven, B. J. Hinnebusch, S. K. Buchanan
Structural Engineering Of A Phage Lysin That Targets Gram-Negative Pathogens.
Proc. Natl. Acad. Sci. Usa V. 109 9857 2012
PubMed-ID: 22679291  |  Reference-DOI: 10.1073/PNAS.1203472109

(-) Compounds

Molecule 1 - PESTICIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PST, YP_PPCP06, YPPCP1.05C
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 632

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric/Biological Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4EPF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EPF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EPF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EPF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EPF)

(-) Exons   (0, 0)

(no "Exon" information available for 4EPF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh.eeee.......eeeee..eeeeeee............................eeeeeeee...eeeeeeeeeeehhhhhhhhhhh..hhhhhhh.eeeee.....eeee.hhhhhhhhhhhhhh..hhhhhhh......eeeee........hhhhh..eee..ee....hhhhhhhh..hhhhhhhh.......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4epf A  14 PAFLFSGSTLSITIALPHYVDLPGRSNFKLmYImGFPIDTEmEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVmVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFLRRSVNIVDHDIFSSNGFEGFNPTSHFPSNPSSDYFNSTGVTFGSGVDLGQRSKQDLLNDGVPQYIADRLDGYYmLRGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGmSDRRKREGALVQKDIDSGLL 356
                                    23||      43        53|  |    63 |      73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233|      243       253       263       273       283       293       303       313       323       333  |    343       353   
                                     24|                 54-MSE     65-MSE                                       111-MSE                                                                                                                    234-MSE                                                                                               336-MSE                
                                      35                    57-MSE                                                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh.eeee.......eeeee..eeeeeee............................eeeeeeee...eeeeeeeeeeehhhhhhhhhhh..hhhhhhh.eeeee.....eeee.hhhhhhhhhhhhhh..hhhhhh.......eeeee...............eee..ee....hhhhhhhh..hhhhhhhh......hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4epf B  14 PAFLFSGSTLSNSITIALPHYVDLPGRSNFKLmYImGFPIDTEmEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVmVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFLRRSVNIVDHDIFSSNGFEGFNPTSHFPSNPSSDYFNSTGVTFGSGVDLGQRSKQDLLNDGVPQYIADRLDGYYmLRGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGmSDRRKREGALVQKDIDSGLL 356
                                    23||      41        51  |  |  61   |    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  |    241       251       261       271       281       291       301       311       321       331    |  341       351     
                                     24|                   54-MSE     65-MSE                                       111-MSE                                                                                                                    234-MSE                                                                                               336-MSE                
                                      33                      57-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EPF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EPF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EPF)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q57159_YERPE | Q57159: 4aqn 4arj 4arl 4arm 4arp 4arq 4epi 4exm

(-) Related Entries Specified in the PDB File

4epa 4epi