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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE FERRIC YERSINIABACTIN UPTAKE RECEPTOR FYUA FROM YERSINIA PESTIS
 
Authors :  P. Lukacik, T. J. Barnard, S. K. Buchanan
Date :  17 Apr 12  (Deposition) - 20 Jun 12  (Release) - 04 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Tonb Dependent Transporter, Iron Import, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Lukacik, T. J. Barnard, P. W. Keller, K. S. Chaturvedi, N. Seddiki, J. W. Fairman, N. Noinaj, T. L. Kirby, J. P. Henderson, A. C. Steven, B. J. Hinnebusch, S. K. Buchanan
Structural Engineering Of A Phage Lysin That Targets Gram-Negative Pathogens.
Proc. Natl. Acad. Sci. Usa V. 109 9857 2012
PubMed-ID: 22679291  |  Reference-DOI: 10.1073/PNAS.1203472109

(-) Compounds

Molecule 1 - PESTICIN RECEPTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FYUA, PSN, YPO1906, Y2404, YP_1649
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 632
    Synonym: FERRIC YERSINIABACTIN UPTAKE RECEPTOR, FYUA, IRPC

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric/Biological Unit (2, 17)
No.NameCountTypeFull Name
1LDA2Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2MSE15Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:163 , ARG A:222 , ARG A:255BINDING SITE FOR RESIDUE LDA A 701
2AC2SOFTWAREGLY A:170 , SER A:171BINDING SITE FOR RESIDUE LDA A 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EPA)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:75 -Ala A:76
2Leu A:314 -Gly A:315
3Asp A:316 -Ala A:317

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EPA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EPA)

(-) Exons   (0, 0)

(no "Exon" information available for 4EPA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:632
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh..eeeeehhhhhhh...hhhhhhhh.................................eeee..ee.hhhhh......eeeeeeee.............eeeeeee.......eeeeeeeee...eeeeeeeeeeeee...eeeeeeeeeeee................eeeeeeeeeeee......eeeeeeeeeeeeee.....ee..................eeeeeeeeeee..eee....eeeeeeeeeeeeeeeeeee..eeee..eeeeeeeeeeeee.......eeeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee..eeeeeeee..ee...................eeeeeeeeeeeee...eeeeeeeeeeeee..ee...ee..eeeeeeeeeeeee......eeeeeeeeeeeee.................eeeeeeee.........eeeeeeeeee...............eeeeeeeeee.....eeeeeeee.......eeeeeee..eeeeee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4epa A  13 TASKQSSRSASANNVSSTVVSAPELSDAGVTASDKLPRVLPGLNIENSGNmLFSTISLRGVSSAQDFYNPAVTLYVDGVPQLSTNTIQALTDVQSVELLRGPQGTLYGKSAQGGIINIVTQQPDSTPRGYIEGGVSSRDSYRSKFNLSGPIQDGLLYGSVTLLRQVDDGDmINPATGSDDLGGTRASIGNVKLRLAPDDQPWEmGFAASRECTRATQDAYVGWNDIKGRKLSISDGSPDPYmRRCTDSQTLSGKYTTDDWVFNLISAWQQQHYSRTFPSGSLIVNmPQRWNQDVQELRAATLGDARTVDmVFGLYRQNTREKLNSAYDmPTmPYLSSTGYTTAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSSTQYHGSmLGNPFGDQGKSNDDQVLGQLSAGYmLTDDWRVYTRVAQGYKPSGYNIVPTAGLDAKPFVAEKSINYELGTRYETADVTLQAATFYTHTKDmQLQTLSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFTNDSELYHGNRVPFVPRYGAGSSVNGVIDTRYGALmPRLAVNLVGPHYFDGDNQLRQGTYATLDSSLGWQATERmNISVYVDNLFDRRYRTYGYmNGSSAVAQVNmGRTVGINTRIDFF 651
                                    22        32        42        52        62|       72        82        92       102       112       122       132       142       152       162       172       182|      192       202       212   |   222       232       242       252 |     262       272       282       292     | 302       312       322       332       342 |     352       362       372       382       392|      402       412     | 422       432       442       452       462       472       482 | ||  499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649  
                                                                             63-MSE                                                                                                                 183-MSE                          216-MSE                               254-MSE                                     298-MSE                 322-MSE            341-MSE                                             393-MSE                  418-MSE                                                           484-MSE                                                                      568-MSE                                607-MSE             627-MSE    638-MSE         
                                                                                                                                                                                                                                                                                                                                                                     344-MSE                                                                                                                                       486|                                                                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    494
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EPA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EPA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EPA)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4epf 4epi