4EOQ - JenaLib

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Title :   THR 160 PHOSPHORYLATED CDK2 WT - HUMAN CYCLIN A3 COMPLEX WITH ATP

Authors :   A. Echalier, E. Cot, A. Camasses, E. Hodimont, F. Hoh, F. Sheinerman, L. Krasinska, D. Fisher

Date :   14 Apr 12 (Deposition) - 06 Feb 13 (Release) - 06 Feb 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Protein Kinase, Cell Cycle, Complex, Phosphorylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Echalier, E. Cot, A. Camasses, E. Hodimont, F. Hoh, P. Jay, F. Sheinerman, L. Krasinska, D. Fisher
An Integrated Chemical Biology Approach Provides Insight Into Cdk2 Functional Redundancy And Inhibitor Sensitivity.
Chem. Biol. V. 19 1028 2012
PubMed-ID: 22921070 | Reference-DOI: 10.1016/J.CHEMBIOL.2012.06.015

Molecule 1 - CYCLIN-DEPENDENT KINASE 2
	Chains	:	A, C
	EC Number	:	2.7.11.22
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	CDK2, CDKN2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CELL DIVISION PROTEIN KINASE 2, P33 PROTEIN KINASE

Molecule 2 - CYCLIN-A2
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	C-TERMINAL FRAGMENT
	Gene	:	CCNA2, CCN1, CCNA
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CYCLIN-A

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	2	Ligand/Ion	MAGNESIUM ION
3	SGM	2	Ligand/Ion	MONOTHIOGLYCEROL
4	TPO	2	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	SGM	1	Ligand/Ion	MONOTHIOGLYCEROL
4	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	SGM	1	Ligand/Ion	MONOTHIOGLYCEROL
4	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:10 , GLU A:12 , GLY A:13 , THR A:14 , ALA A:31 , LYS A:33 , PHE A:80 , GLU A:81 , LEU A:83 , GLN A:131 , ASN A:132 , LEU A:134 , ASP A:145 , MG A:302 , HOH A:468 , HOH A:512 , HOH A:523	BINDING SITE FOR RESIDUE ATP A 301
2	AC2	SOFTWARE	ASN A:132 , ASP A:145 , ATP A:301 , HOH A:512	BINDING SITE FOR RESIDUE MG A 302
3	AC3	SOFTWARE	MET B:200 , GLN B:203 , ILE B:206 , HOH B:715 , HOH B:716	BINDING SITE FOR RESIDUE MG B 501
4	AC4	SOFTWARE	MET B:189 , CYS B:193 , ARG B:241 , ASP B:305	BINDING SITE FOR RESIDUE SGM B 502
5	AC5	SOFTWARE	ILE C:10 , GLU C:12 , ALA C:31 , LYS C:33 , PHE C:80 , GLU C:81 , LEU C:83 , ASP C:86 , GLN C:131 , ASN C:132 , LEU C:134 , ASP C:145 , HOH C:414 , HOH C:436 , HOH C:459 , HOH C:477	BINDING SITE FOR RESIDUE ATP C 301
6	AC6	SOFTWARE	CYS D:193 , ARG D:241 , ASP D:305	BINDING SITE FOR RESIDUE SGM D 501

(no "SS Bond" information available for 4EOQ)

Asymmetric Unit

No.	Residues
1	Val A:154	-	Pro A:155
2	Gln B:323	-	Pro B:324
3	Asp B:345	-	Pro B:346
4	Pro C:-3	-	Leu C:-2
5	Val C:154	-	Pro C:155
6	Ser C:249	-	Lys C:250
7	Pro C:253	-	Pro C:254
8	Gln D:323	-	Pro D:324
9	Asp D:345	-	Pro D:346

(no "SAP(SNP)/Variant" information available for 4EOQ)

(no "PROSITE Motif" information available for 4EOQ)

(no "Exon" information available for 4EOQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4eoqa_ A: Cyclin-dependent PK, CDK2                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhh.eeeeeeeee....eeeeeee.....eeeeeeee.....hhhhhhhhhhhhhh.......eeeeee...eeeeeee...eehhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh........hhhhh.............hhhhh....hhhhhhhhhhhh........hhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eoq A  -1 GSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLTEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYtHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLR 297
                                     8        18        28        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291      
                                                                 37|                                                                                                                    160-TPO                                                                                                                                     
                                                                  41

Chain B from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains d4eoqb1 B:176-309 Cyclin A                                                                                                            d4eoqb2 B:310-432 Cyclin A                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eoq B 176 PDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETLNL 432
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425

Chain C from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4eoqc_ C: Cyclin-dependent PK, CDK2                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhh.eeeeeeee......eeeeee.....eeeeeeee........hhhhhhhhhhhhhh.......eeeeee...eeeeeee...eehhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee.hhhhhee.............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh............hhhhhhhhhhhh........hhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4eoq C  -3 PLGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYtHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHL 296
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156   |   166       176       186       196       206       216    || 250       260       270       280       290      
                                                                                                                                                                                             160-TPO                                                      221|                                                  
                                                                                                                                                                                                                                                           246

Chain D from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains d4eoqd1 D:176-309 Cyclin A                                                                                                            d4eoqd2 D:310-429 Cyclin A                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh....hhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eoq D 176 PDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPET 429
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Cyclin-like (137)

Superfamily: Cyclin-like (137)

Family: Cyclin (117)

Protein domain: Cyclin A (82)

Human (Homo sapiens) [TaxId: 9606] (73)

1a	d4eoqb1	B:176-309
1b	d4eoqb2	B:310-432
1c	d4eoqd1	D:176-309
1d	d4eoqd2	D:310-429

Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: Protein kinases, catalytic subunit (1977)

Protein domain: Cyclin-dependent PK, CDK2 (340)

Human (Homo sapiens) [TaxId: 9606] (336)

2a	d4eoqa_	A:
2b	d4eoqc_	C:

(no "CATH Domain" information available for 4EOQ)

(no "Pfam Domain" information available for 4EOQ)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		ATP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
		Asp B:345 - Pro B:346	[ RasMol ]
		Asp D:345 - Pro D:346	[ RasMol ]
		Gln B:323 - Pro B:324	[ RasMol ]
		Gln D:323 - Pro D:324	[ RasMol ]
		Pro C:-3 - Leu C:-2	[ RasMol ]
		Pro C:253 - Pro C:254	[ RasMol ]
		Ser C:249 - Lys C:250	[ RasMol ]
		Val A:154 - Pro A:155	[ RasMol ]
		Val C:154 - Pro C:155	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	2.7.11.22
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (9, 9)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (2, 6)

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Gene Ontology (84, 95)

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