4EN9 - JenaLib

Title :   CRYSTAL STRUCTURE OF HA70 (HA3) SUBCOMPONENT OF CLOSTRIDIUM BOTULINUM TYPE C PROGENITOR TOXIN IN COMPLEX WITH ALPHA 2-6-SIALYLLACTOSAMINE

Authors :   S. Yamashita, H. Yoshida, T. Tonozuka, A. Nishikawa, S. Kamitori

Date :   12 Apr 12 (Deposition) - 06 Jun 12 (Release) - 16 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.64

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (3x)

Keywords :   Carbohydrate/Sugar Binding, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Yamashita, H. Yoshida, N. Uchiyama, Y. Nakakita, S. Nakakita, T. Tonozuka, K. Oguma, A. Nishikawa, S. Kamitori
Carbohydrate Recognition Mechanism Of Ha70 From Clostridium Botulinum Deduced From X-Ray Structures In Complexes With Sialylated Oligosaccharides
Febs Lett. V. 586 2404 2012
PubMed-ID: 22684008 | Reference-DOI: 10.1016/J.FEBSLET.2012.05.055
(for further references see the PDB file header)

Compounds

Molecule 1 - HEMAGGLUTININ COMPONENTS HA-22/23/53
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMAL-CRI
	Expression System Strain	:	JM109
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	HA22-23(HA3A)
	Gene	:	HA-70
	Organism Scientific	:	CLOSTRIDIUM BOTULINUM
	Organism Taxid	:	1491
	Synonym	:	HEMAGGLUTININ COMPONENTS HA70, HA3

Molecule 2 - HEMAGGLUTININ COMPONENTS HA-22/23/53
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMAL-CRI
	Expression System Strain	:	JM109
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	HA53(HA3B)
	Gene	:	HA-70
	Organism Scientific	:	CLOSTRIDIUM BOTULINUM
	Organism Taxid	:	1491
	Synonym	:	HEMAGGLUTININ COMPONENTS HA70, HA3

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	GAL	1	Ligand/Ion	BETA-D-GALACTOSE
2	MRD	5	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL
3	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SIA	1	Ligand/Ion	O-SIALIC ACID

Biological Unit 1 (4, 24)

No.	Name	Count	Type	Full Name
1	GAL	3	Ligand/Ion	BETA-D-GALACTOSE
2	MRD	15	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL
3	NAG	3	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SIA	3	Ligand/Ion	O-SIALIC ACID

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:102 , SER A:104 , HOH A:427 , SER B:243 , VAL B:293	BINDING SITE FOR RESIDUE MRD A 301
2	AC2	SOFTWARE	ASP A:58 , LEU A:59 , GLY A:100 , GLU A:102 , PRO B:247	BINDING SITE FOR RESIDUE MRD A 302
3	AC3	SOFTWARE	LYS A:161 , PHE A:165 , HOH A:451 , ILE B:368 , ILE B:369	BINDING SITE FOR RESIDUE MRD A 303
4	AC4	SOFTWARE	ILE B:264 , TYR B:269 , ASN B:317 , ASN B:374 , SER B:376	BINDING SITE FOR RESIDUE MRD B 704
5	AC5	SOFTWARE	ASN A:50 , HOH A:411 , GLU B:294 , PRO B:297 , LYS B:300 , ILE B:302 , ASP B:341	BINDING SITE FOR RESIDUE MRD B 705
6	AC6	SOFTWARE	ASN B:320 , ARG B:460 , SER B:461 , ASP B:462 , ASP B:513 , ASN B:514 , TYR B:522 , TYR B:523 , THR B:524 , ARG B:525 , HOH B:801 , HOH B:802 , HOH B:803 , HOH B:804	BINDING SITE FOR LINKED RESIDUES B 701 TO 703

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeeeee.........eeeee...eeeeeee........eee.....hhhhhhhhhhhhh.hhhhhh....eeeeeee.....eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeee................ee......eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4en9 A  15 SINNVNLADGNYVVNRGDGWILSRQNQNLGGNISNNGCTAIVGDLRIRETATPYYYPTASFNEEYIKNNVQNVFANFTEASEIPIGFEFSKTAPSNKSLYMYLQYTYIRYEIIKVLQNTVTERAVLYVPSLGYVKSIEFNSEEQIDKNFYFTSQDKCILNEKFIYKKIDD 184
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184

Chain B from PDB  Type:PROTEIN  Length:420
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeee....eee.....eeeeeee....eeeeee.........eeee......hhhhhhhhhhhhhh.........eeeeeee......eeeeee..eeeeeeeeee..eeeeeeeeeee...eeeeee.................eee......eeeee.....eeee.......eeeee.hhhhhh..eeeee.....eeeeee........eeeee.......ee..........eeeeeee.......eeeeeee.....eeeee.........eeeeeee.hhhhhhh.eeeee..........eeeee......eeeeeee.........eeeeeeee...eeeeeeeeee......eeeeeeee.........eeee...eeeeeeeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4en9 B 204 QTILPYPNGLYVINKGDGYMRTNDKDLIGTLLIESSTSGSIIQPRLRNTTRPLFNTSNPTIFSQEYTEARLNDAFNIQLFNTSTTLFKFVEEAPTNKNISMKVYNTYEKYELINYQNGNIDDKAEYYLPSLGKCEVSDAPSPQAPVVETPVDQDGFIQTGPNENIIVGVINPSENIEEISTPIPDDYTYNIPTSIQNNACYVLFKVNTTGVYKITTKNNLPPLIIYEAIGSSNRNMNSNNLSNDNIKAIKYITGLNRSDAKSYLIVSLFKDKNYYIRIPQISSSTTSQLIFKRELGNISDLADSTVNILDNLNTSGTHYYTRQSPDVGNYISYQLTIPGDFNNIASSIFSFRTRNNQGIGTLYRLTESINGYNLITINNYSDLLNNVEPISLLNGATYIFRVKVTELNNYNIIFDAYRNS 623
                                   213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

2zoe	THE SAME SUBCOMPONENT IN COMPLEX WITH N-ACETYLNEURAMIC ACID
2zs6	THE SAME SUBCOMPONENT WITHOUT LIGAND
4en6	THE SAME SUBCOMPONENT IN COMPLEX WITH ALPHA 2-3- SIALYLLACTOSE
4en7	THE SAME SUBCOMPONENT IN COMPLEX WITH ALPHA 2-3- SIALYLLACTOSAMINE
4en8	THE SAME SUBCOMPONENT IN COMPLEX WITH ALPHA 2-6- SIALYLLACTOSE

Description