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(-) Description

Title :  HA3 SUBCOMPONENT OF CLOSTRIDIUM BOTULINUM TYPE C PROGENITOR TOXIN, COMPLEX WITH N-ACETYLNEURAMIC ACID
 
Authors :  T. Nakamura, M. Kotani, T. Tonozuka, A. Ide, K. Oguma, A. Nishikawa
Date :  09 May 08  (Deposition) - 02 Dec 08  (Release) - 27 Jan 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Toxin, Hemagglutinin, Jelly Roll (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Nakamura, M. Kotani, T. Tonozuka, A. Ide, K. Oguma, A. Nishikawa
Crystal Structure Of The Ha3 Subcomponent Of Clostridium Botulinum Type C Progenitor Toxin
J. Mol. Biol. V. 385 1193 2009
PubMed-ID: 19071137  |  Reference-DOI: 10.1016/J.JMB.2008.11.039
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEMAGGLUTININ COMPONENTS HA3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MBP-2XFLAG-HA3
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: HA3A
    Gene: HA3
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 1491
    Strain: TYPE C
    Synonym: HA-22-23
 
Molecule 2 - HEMAGGLUTININ COMPONENTS HA3
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MBP-2XFLAG-HA3
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: HA3B
    Gene: HA3
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 1491
    Strain: TYPE C
    Synonym: HA-53

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SLB1Ligand/Ion5-N-ACETYL-BETA-D-NEURAMINIC ACID
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
2SLB3Ligand/Ion5-N-ACETYL-BETA-D-NEURAMINIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:460 , ASP B:462 , ASP B:513 , ASN B:514 , HIS B:521 , TYR B:522 , TYR B:523 , THR B:524 , ARG B:525 , HOH B:2119BINDING SITE FOR RESIDUE SLB B 2000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZOE)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu B:423 -Pro B:424

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZOE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZOE)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZOE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:168
 aligned with HA70_CLOBO | P46085 from UniProtKB/Swiss-Prot  Length:623

    Alignment length:168
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176        
           HA70_CLOBO    17 NNVNLADGNYVVNRGDGWILSRQNQNLGGNISNNGCTAIVGDLRIRETATPYYYPTASFNEEYIKNNVQNVFANFTEASEIPIGFEFSKTAPSNKSLYMYLQYTYIRYEIIKVLQNTVTERAVLYVPSLGYVKSIEFNSEEQIDKNFYFTSQDKCILNEKFIYKKIDD 184
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeeeeeeeee.........eeeee...eeeeeeee.......eee.....hhhhhhhhhhhhh.hhhhhh...eeeeeeee.....eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeee......hhhhhh....ee......eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zoe A  17 NNVNLADGNYVVNRGDGWILSRQNQNLGGNISNNGCTAIVGDLRIRETATPYYYPTASFNEEYIKNNVQNVFANFTEASEIPIGFEFSKTAPSNKSLYmYLQYTYIRYEIIKVLQNTVTERAVLYVPSLGYVKSIEFNSEEQIDKNFYFTSQDKCILNEKFIYKKIDD 184
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176        
                                                                                                                            115-MSE                                                                 


Chain B from PDB  Type:PROTEIN  Length:420
 aligned with HA70_CLOBO | P46085 from UniProtKB/Swiss-Prot  Length:623

    Alignment length:420
                                   213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623
           HA70_CLOBO   204 QTILPYPNGLYVINKGDGYMRTNDKDLIGTLLIESSTSGSIIQPRLRNTTRPLFNTSNPTIFSQEYTEARLNDAFNIQLFNTSTTLFKFVEEAPTNKNISMKVYNTYEKYELINYQNGNIDDKAEYYLPSLGKCEVSDAPSPQAPVVETPVDQDGFIQTGPNENIIVGVINPSENIEEISTPIPDDYTYNIPTSIQNNACYVLFKVNTTGVYKITTKNNLPPLIIYEAIGSSNRNMNSNNLSNDNIKAIKYITGLNRSDAKSYLIVSLFKDKNYYIRIPQISSSTTSQLIFKRELGNISDLADSTVNILDNLNTSGTHYYTRQSPDVGNYISYQLTIPGDFNNIASSIFSFRTRNNQGIGTLYRLTESINGYNLITINNYSDLLNNVEPISLLNGATYIFRVKVTELNNYNIIFDAYRNS 623
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----------------------Clenterotox-2zoeB01 B:227-423                                                                                                                                                                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------Clenterotox-2zoeB02 B:227-423                                                                                                                                                                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -----------------------Clenterotox-2zoeB03 B:227-423                                                                                                                                                                        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
         Sec.struct. author ........eeeeee....eee.....eeeeeee....eeeeee.........eeee......hhhhhhhhhhhhhh........eeeeeeee......eeeeee..eeeeeeeeee..eeeeeeeeeee...eeeeee.................eee......eeeee......eee.......eeeee.hhhhhh..eeeee.....eeeeeee.hhh...eeeee.......ee..........eeeeeee.......eeeeeee.....eeeee.........eeeeeee.hhhhhhh.eeeee..........eeeee......eeeeeee........eeeeeeeee...ee..eeeeee......eeeeeee..........eeee...eeeeeeeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zoe B 204 QTILPYPNGLYVINKGDGYmRTNDKDLIGTLLIESSTSGSIIQPRLRNTTRPLFNTSNPTIFSQEYTEARLNDAFNIQLFNTSTTLFKFVEEAPTNKNISmKVYNTYEKYELINYQNGNIDDKAEYYLPSLGKCEVSDAPSPQAPVVETPVDQDGFIQTGPNENIIVGVINPSENIEEISTPIPDDYTYNIPTSIQNNACYVLFKVNTTGVYKITTKNNLPPLIIYEAIGSSNRNmNSNNLSNDNIKAIKYITGLNRSDAKSYLIVSLFKDKNYYIRIPQISSSTTSQLIFKRELGNISDLADSTVNILDNLNTSGTHYYTRQSPDVGNYISYQLTIPGDFNNIASSIFSFRTRNNQGIGTLYRLTESINGYNLITINNYSDLLNNVEPISLLNGATYIFRVKVTELNNYNIIFDAYRNS 623
                                   213       223       233       243       253       263       273       283       293       303|      313       323       333       343       353       363       373       383       393       403       413       423       433     | 443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623
                                             223-MSE                                                                          304-MSE                                                                                                                                439-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZOE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZOE)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: no clan defined [family: Clenterotox] (2)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (HA70_CLOBO | P46085)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HA70_CLOBO | P46085: 2zs6 4en6 4en7 4en8 4en9

(-) Related Entries Specified in the PDB File

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