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(-) Description

Title :  STRUCTURE OF THE TSG101 UEV DOMAIN IN COMPLEX WITH AN EBOLA PTAP LATE DOMAIN PEPTIDE
 
Authors :  A. Camara-Artigas
Date :  06 Apr 12  (Deposition) - 10 Apr 13  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Alpha And Beta Protein, Uev Domain, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Camara-Artigas, A. Palencia, M. Andujar-Sanchez, M Iglesias-Bexiga, I. Luque, J. C. Martinez
To Be Published
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TUMOR SUSCEPTIBILITY GENE 101 PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAT4
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UEV DOMAIN (UNP RESIDUES 1-145)
    Gene: TSG101
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ESCRT-I COMPLEX SUBUNIT TSG101
 
Molecule 2 - MATRIX PROTEIN VP40
    Chains: C, D
    Engineered: YES
    Fragment: EBOLA VIRUS PTAP LATE DOMAIN (UNP RESIDUES 5-13)
    Organism Common: ZEBOV
    Organism Scientific: EBOLA VIRUS
    Organism Taxid: 128952
    Other Details: 9 RESIDUES PEPTIDE OF THE PTAP LATE DOMAIN OF THE EBOLA VIRUS
    Synonym: MEMBRANE-ASSOCIATED PROTEIN VP40
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:104 , ALA A:105 , TYR B:17 , ARG B:64BINDING SITE FOR RESIDUE SO4 A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EJE)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Tyr A:80 -Pro A:81
2His A:119 -Pro A:120
3Asp B:46 -Gly B:47
4Tyr B:80 -Pro B:81
5His B:119 -Pro B:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EJE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EJE)

(-) Exons   (0, 0)

(no "Exon" information available for 4EJE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh....hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeeeeeeeeeee..eeeeeeeeee..........eeee.....eee.............hhhhhh......hhhhhhhhhhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eje A   3 VSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRP 145
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142   


Chain B from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...hhhhhhhhhhhhhhhh..eeeeee...........eeeeeeeeeeee..eeeeeeeeeee........eeeee.....eee.............hhhhhh......hhhhhhhhhhhhhhhh..eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eje B   3 VSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSR 144
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142  


Chain C from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4eje C   1 ILPTAPPEY   9


Chain D from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4eje D   1 ILPTAPPEY   9
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EJE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EJE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EJE)

(-) Gene Ontology  (69, 74)

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  TS101_HUMAN | Q99816
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  VP40_EBOZM | Q05128
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TS101_HUMAN | Q99816: 1kpp 1kpq 1m4p 1m4q 1s1q 2f0r 3iv1 3obq 3obs 3obu 3obx 3p9g 3p9h 4yc1 4zny
        VP40_EBOZM | Q05128: 1h2c 1h2d 2kq0 4ldb 4ldd 4ldi 4ldm

(-) Related Entries Specified in the PDB File

2f0r CRYSTALLOGRAPHIC STRUCTURE OF HUMAN TSG101 UEV DOMAIN