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(-) Description

Title :  CRYSTAL STRUCTURE OF I-GZEII LAGLIDADG HOMING ENDONUCLEASE IN COMPLEX WITH DNA TARGET SITE
 
Authors :  N. Kulshina
Date :  29 Mar 12  (Deposition) - 02 May 12  (Release) - 03 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  B,C,D  (1x)
Biol. Unit 2:  A,E,F  (1x)
Keywords :  Dna-Cutting Enzyme, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Kulshina
Crystal Structure Of I-Gzemii Laglidadg Homing Endonuclease In Complex With Dna Target Site
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA TARGET SITE TOP STRAND
    Chains: C, E
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA TARGET SITE BOTTOM STRAND
    Chains: D, F
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - LAGLIDADG ENDONUCLEASE
    Chains: A, B
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24B
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NAD2, SMALL SUBUNIT RIBOSOMAL RNA GENE
    Organism Common: WHEAT HEAD BLIGHT FUNGUS
    Organism Scientific: GIBBERELLA ZEAE
    Organism Taxid: 5518
    Synonym: I-GZEMII

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x):  BCD  
Biological Unit 2 (1x): A   EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU B:19 , GLY B:176 , DT C:16 , DT D:15BINDING SITE FOR RESIDUE CA C 101
2AC2SOFTWAREALA A:18 , GLU A:177 , DT E:15 , DG F:16BINDING SITE FOR RESIDUE CA A 401
3AC3SOFTWAREGLU A:19 , GLY A:176 , LYS A:256 , DT E:16 , HOH E:104 , DT F:15BINDING SITE FOR RESIDUE CA A 402
4AC4SOFTWAREALA B:18 , GLU B:177 , DT C:15 , DG D:16BINDING SITE FOR RESIDUE CA B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EFJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EFJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EFJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EFJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4EFJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:291
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh.eeeeeeee....eeeeeeeeeeee..hhhhhhhhhhhh....eeee...eeeeee.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..ee....hhhhhhhhhhh......hhhhhhh..................hhhhhhhhhhhheeeeeee......eeeeeeeeee..hhhhhhhhhhhhh..eeee......eeeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4efj A   6 SINPWFVTGFTDAEGSFMIHLEKNKDKWRVRPTFQIKLDIRDKSLLEEIKNYFNNTGSINTSNKECVYKVRSLKDISIIISHFDKYNLITQKKADFELFKKIINKLNSQEHLSYEVGATVLQEIISIRASMNLGLSSSVKEDFPHIIPSNRPLIENMNIPHPEWMAGFVSGEGSFSVYTTSDDKYVSLSFRVSQHNKDKQLLKSFVDFFGCGGFNYHNKGNKAVIFVTRKFEDINDKIIPLFNEYKIKGVKYKDFKDWSKVAKMIESKSHLTTNGYKEICKIKENMNSYRK 296
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295 


Chain B from PDB  Type:PROTEIN  Length:291
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh.eeeeeeeee..eeeeeeeeeeeee..hhhhhhhhhhhh....eeee...eeeeee.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eee...hhhhhhhhhhhh.....hhhhhhhh.................hhhhhhhhhhhheeeeeee......eeeeeeeeee..hhhhhhhhhhhhh..eeee......eeeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4efj B   6 SINPWFVTGFTDAEGSFMIHLEKNKDKWRVRPTFQIKLDIRDKSLLEEIKNYFNNTGSINTSNKECVYKVRSLKDISIIISHFDKYNLITQKKADFELFKKIINKLNSQEHLSYEVGATVLQEIISIRASMNLGLSSSVKEDFPHIIPSNRPLIENMNIPHPEWMAGFVSGEGSFSVYTTSDDKYVSLSFRVSQHNKDKQLLKSFVDFFGCGGFNYHNKGNKAVIFVTRKFEDINDKIIPLFNEYKIKGVKYKDFKDWSKVAKMIESKSHLTTNGYKEICKIKENMNSYRK 296
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295 


Chain C from PDB  Type:DNA  Length:27
                                                           
                 4efj C   1 GGATGGGTACCATATTGGTACAAAGGG  27
                                    10        20       


Chain D from PDB  Type:DNA  Length:26
                                                          
                 4efj D   1 CCTTTGTACCAATATGGTACCCATCC  26
                                    10        20      


Chain E from PDB  Type:DNA  Length:27
                                                           
                 4efj E   1 GGATGGGTACCATATTGGTACAAAGGG  27
                                    10        20       


Chain F from PDB  Type:DNA  Length:26
                                                          
                 4efj F   1 CCTTTGTACCAATATGGTACCCATCC  26
                                    10        20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EFJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EFJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EFJ)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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  4efj
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  A5J036_GIBZE | A5J036
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 Related Entries

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        A5J036_GIBZE | A5J036: 4z1x

(-) Related Entries Specified in the PDB File

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