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(-) Description

Title :  ACANTHAMOEBA ACTIN COMPLEX WITH SPIR DOMAIN D
 
Authors :  C. Chen, M. Phillips, M. R. Sawaya, M. E. Quinlan
Date :  29 Mar 12  (Deposition) - 11 Apr 12  (Release) - 11 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.48
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cytoskeleton, Contractile Protein, Contractile Protein-Transport Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. K. Chen, M. R. Sawaya, M. L. Phillips, E. Reisler, M. E. Quinlan
Multiple Forms Of Spire-Actin Complexes And Their Functiona Consequences.
J. Biol. Chem. V. 287 10684 2012
PubMed-ID: 22334675  |  Reference-DOI: 10.1074/JBC.M111.317792

(-) Compounds

Molecule 1 - ACTIN-1
    Chains: A
    Organism Common: AMOEBA
    Organism Scientific: ACANTHAMOEBA CASTELLANII
    Organism Taxid: 5755
 
Molecule 2 - PROTEIN SPIRE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: WH2 DOMAINS C AND D, UNP RESIDUES 428 - 485
    Gene: SPIR, P150-SPIR, CG10076
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2CA2Ligand/IonCALCIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREADP A:403 , HOH A:502 , HOH A:509 , HOH A:510 , HOH A:534 , HOH A:535BINDING SITE FOR RESIDUE CA A 401
2AC2SOFTWAREPRO A:264 , SER A:265 , SER A:271BINDING SITE FOR RESIDUE CA A 402
3AC3SOFTWAREGLY A:13 , SER A:14 , GLY A:15 , MET A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:182 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , PHE A:306 , LYS A:336 , CA A:401 , HOH A:510 , HOH A:535 , HOH A:551 , HOH A:592BINDING SITE FOR RESIDUE ADP A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EFH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EFH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EFH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EFH)

(-) Exons   (0, 0)

(no "Exon" information available for 4EFH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4efha1 A:5-146 automated matches                                                                                                       d4efha2 A:147-374 automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeee.......eeee..eeee........eehhhhhhh...eeee.........hhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh....eeeeee....eeeeeee..ee.hhhheee..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhh....eeee.....eeee.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhh.eeeehhhhhh.hhhhhhhhhhhhhh.......ee......hhhhhhhhhhhh........eehhhhhhhh.hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4efh A   5 VQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAASSSALEKSYELPDGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKC 374
                                    14        24        34       |50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370    
                                                                42|                                                                                                                                                                                                                                                                                                                                     
                                                                 49                                                                                                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:20
                                                    
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                 4efh B  74 PSPREQLMESIRKGKELKQI  93
                                    83        93
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EFH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EFH)

(-) Gene Ontology  (29, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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  4efh
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPIR_DROME | Q9U1K1: 3mmv 3mn5 3mn6 3mn7 3mn9 3ue5

(-) Related Entries Specified in the PDB File

3ue5 COMPLEX WITH RABBIT ACTIN AND THE SAME SPIR DOMAIN D.