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(-) Description

Title :  STRUCTURE OF PARF-AMPPCP, I422 FORM
 
Authors :  M. A. Schumacher, Q. Ye, M. R. Barge, D. Barilla, F. Hayes
Date :  02 Mar 12  (Deposition) - 13 Jun 12  (Release) - 15 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Deviant Walker Box, Dna Segregation, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, Q. Ye, M. T. Barge, M. Zampini, D. Barilla, F. Hayes
Structural Mechanism Of Atp-Induced Polymerization Of The Partition Factor Parf: Implications For Dna Segregation.
J. Biol. Chem. V. 287 26146 2012
PubMed-ID: 22674577  |  Reference-DOI: 10.1074/JBC.M112.373696

(-) Compounds

Molecule 1 - PLASMID PARTITIONING PROTEIN PARF
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PARF, POLA52_52
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ACP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:10 , GLY A:11 , GLY A:12 , GLY A:14 , LYS A:15 , THR A:16 , THR A:17 , ASP A:39 , SER A:43 , ASP A:82 , GLY A:83 , SER A:108 , ASP A:111 , ARG A:139 , ILE A:166 , THR A:167 , GLN A:168 , ARG A:169 , TYR A:172 , VAL A:173BINDING SITE FOR RESIDUE ACP A 301
2AC2SOFTWAREARG A:28 , LYS A:52 , GLU A:184BINDING SITE FOR RESIDUE SO4 A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E09)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E09)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E09)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E09)

(-) Exons   (0, 0)

(no "Exon" information available for 4E09)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:204
 aligned with B0ZE06_ECOLX | B0ZE06 from UniProtKB/TrEMBL  Length:206

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
         B0ZE06_ECOLX     1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFESSDGAAKGEIEILTKEIVRMFE 206
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.......hhhhhhhhhhhhhhh.....eeee....hhhhhhhhhh....eeee..hhhhhh..........eeeee.......hhhhhhhhh.eeeeee.........hhhhhhhhhh..--...eeeeee.....hhhhhhhhhhhhhh.............hhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e09 A   1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQA--RKVEARFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFESSDGAAKGEIEILTKEIVRIFE 206
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140       150       160       170       180       190       200      
                                                                                                                                                       126  |                                                                             
                                                                                                                                                          129
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E09)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E09)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E09)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (B0ZE06_ECOLX | B0ZE06)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  4e09
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B0ZE06_ECOLX | B0ZE06: 4dzz 4e03 4e07

(-) Related Entries Specified in the PDB File

4dzz PARF-ADP FORM1
4e03 PARF-ADP FORM2
4e07 PARF-AMPPCP-C222(1) FORM