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(-) Description

Title :  STRUCTURE OF PARF-ADP FORM 2
 
Authors :  M. A. Schumacher, Q. Ye, M. R. Barge, D. Barilla, F. Hayes
Date :  02 Mar 12  (Deposition) - 13 Jun 12  (Release) - 15 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Partition, Segregation, Multidrug Resistance, Deviant Walker Box, Dna Segregation, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, Q. Ye, M. T. Barge, M. Zampini, D. Barilla, F. Hayes
Structural Mechanism Of Atp-Induced Polymerization Of The Partition Factor Parf: Implications For Dna Segregation.
J. Biol. Chem. V. 287 26146 2012
PubMed-ID: 22674577  |  Reference-DOI: 10.1074/JBC.M112.373696

(-) Compounds

Molecule 1 - PLASMID PARTITIONING PROTEIN PARF
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PARF, POLA52_52
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:12 , SER A:13 , GLY A:14 , LYS A:15 , THR A:16 , THR A:17 , ARG A:139 , ILE A:166 , THR A:167 , GLN A:168 , ARG A:169 , TYR A:172 , VAL A:173 , MG A:502 , HOH A:603 , HOH A:658BINDING SITE FOR RESIDUE ADP A 501
2AC2SOFTWARETHR A:16 , ADP A:501 , HOH A:601 , HOH A:602 , HOH A:603 , HOH A:658BINDING SITE FOR RESIDUE MG A 502
3AC3SOFTWAREGLY B:12 , SER B:13 , GLY B:14 , LYS B:15 , THR B:16 , THR B:17 , ARG B:139 , ILE B:166 , THR B:167 , GLN B:168 , ARG B:169 , TYR B:172 , VAL B:173 , MG B:302 , HOH B:402 , HOH B:406 , HOH B:419 , HOH B:428BINDING SITE FOR RESIDUE ADP B 301
4AC4SOFTWARETHR B:16 , ADP B:301 , HOH B:401 , HOH B:402 , HOH B:404 , HOH B:428BINDING SITE FOR RESIDUE MG B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E03)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E03)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E03)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E03)

(-) Exons   (0, 0)

(no "Exon" information available for 4E03)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
 aligned with B0ZE06_ECOLX | B0ZE06 from UniProtKB/TrEMBL  Length:206

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
         B0ZE06_ECOLX     1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFESSDGAAKGEIEILTKEIVRMFE 206
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.......hhhhhhhhhhhhhhhh...eeeee....hhhhhhhh......eeee..hhhhhhhhhhhh....eeeee....hhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.eeeeee....--.hhhhhhhhhhhhh...........hhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e03 A   1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKI--ATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFESSDGAAKGEIEILTKEIVRIFE 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|  |   150       160       170       180       190       200      
                                                                                                                                                                      141  |                                                              
                                                                                                                                                                         144                                                              


Chain B from PDB  Type:PROTEIN  Length:206
 aligned with B0ZE06_ECOLX | B0ZE06 from UniProtKB/TrEMBL  Length:206

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
         B0ZE06_ECOLX     1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFESSDGAAKGEIEILTKEIVRMFE 206
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.......hhhhhhhhhhhhhhhh...eeeee....hhhhhhhh......eeee...hhhhhhhhhhh....eeeee....hhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhh......eeeee............hhhhhhhh...........hhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e03 B   1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFESSDGAAKGEIEILTKEIVRIFE 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E03)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E03)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E03)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (B0ZE06_ECOLX | B0ZE06)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  4e03
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B0ZE06_ECOLX | B0ZE06: 4dzz 4e07 4e09

(-) Related Entries Specified in the PDB File

4dzz PARF-ADP FORM 1
4e07
4e09