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(-) Description

Title :  CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA FATTY-ACID BINDING PROTEIN AT1G53520 (ATFAP3)
 
Authors :  J. P. Noel, G. V. Louie, M. E. Bowman
Date :  09 Feb 12  (Deposition) - 09 May 12  (Release) - 06 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Chalcone-Isomerase Like Fold, Fatty-Acid Binding, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. N. Ngaki, G. V. Louie, R. N. Philippe, G. Manning, F. Pojer, M. E. Bowman, L. Li, E. Larsen, E. S. Wurtele, J. P. Noel
Evolution Of The Chalcone-Isomerase Fold From Fatty-Acid Binding To Stereospecific Catalysis.
Nature V. 485 530 2012
PubMed-ID: 22622584  |  Reference-DOI: 10.1038/NATURE11009

(-) Compounds

Molecule 1 - AT1G53520
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS8
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 71-287
    Gene: AT1G53520, F22G10.11
    Mutation: YES
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: CHALCONE ISOMERASE, PUTATIVE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PLM1Ligand/IonPALMITIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:44 , LYS A:46 , TYR A:56 , PHE A:113 , ALA A:116 , ILE A:154 , HOH A:1037BINDING SITE FOR RESIDUE PLM A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DOL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DOL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DOL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DOL)

(-) Exons   (0, 0)

(no "Exon" information available for 4DOL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
 aligned with FAP3_ARATH | Q9C8L2 from UniProtKB/Swiss-Prot  Length:287

    Alignment length:207
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
           FAP3_ARATH    81 EDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDEAISPRIKSPSSEDTTALSTFRGIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTLV 287
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee......eee.ee........eeeeeeeeeeee....eeeeeeeeeee.hhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh........eeeeeeee..eeeeeee.........eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dol A  11 EDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDEAISPRIKSPSSEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTLV 217
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DOL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DOL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DOL)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FAP3_ARATH | Q9C8L2)
molecular function
    GO:0045430    chalcone isomerase activity    Catalysis of the reaction: a chalcone = a flavanone.
    GO:0005504    fatty acid binding    Interacting selectively and non-covalently with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0016872    intramolecular lyase activity    The catalysis of certain rearrangements of a molecule to break or form a ring.
biological process
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0009813    flavonoid biosynthetic process    The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009570    chloroplast stroma    The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

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(-) Related Entries Specified in the PDB File

4doi CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA CHALCONE ISOMERASE AT3G55120 (ATCHI)
4dok CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA CHALCONE- ISOMERASE LIKE PROTEIN AT5G05270 (ATCHIL)
4doo