4DOO - JenaLib

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Title :   CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA FATTY-ACID BINDING PROTEIN AT3G63170 (ATFAP1)

Authors :   J. P. Noel, F. Pojer, G. V. Louie, M. E. Bowman

Date :   09 Feb 12 (Deposition) - 09 May 12 (Release) - 06 Jun 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Chalcone-Isomerase Like Fold, Fatty-Acid Binding, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. N. Ngaki, G. V. Louie, R. N. Philippe, G. Manning, F. Pojer, M. E. Bowman, L. Li, E. Larsen, E. S. Wurtele, J. P. Noel
Evolution Of The Chalcone-Isomerase Fold From Fatty-Acid Binding To Stereospecific Catalysis.
Nature V. 485 530 2012
PubMed-ID: 22622584 | Reference-DOI: 10.1038/NATURE11009

Molecule 1 - CHALCONE-FLAVANONE ISOMERASE FAMILY PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHIS8
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 74-278
	Gene	:	AT3G63170, AT3G63170/F16M2_20, F16M2_20
	Organism Common	:	MOUSE-EAR CRESS,THALE-CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Synonym	:	PUTATIVE UNCHARACTERIZED PROTEIN AT3G63170, PUTATIVE UNCHARACTERIZED PROTEIN AT3G63170

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	DAO	4	Ligand/Ion	LAURIC ACID
2	K	2	Ligand/Ion	POTASSIUM ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	DAO	2	Ligand/Ion	LAURIC ACID
2	K	-1	Ligand/Ion	POTASSIUM ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	DAO	2	Ligand/Ion	LAURIC ACID
2	K	-1	Ligand/Ion	POTASSIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:30 , TYR A:43 , ILE A:100 , SER A:110 , PHE A:134 , GLU A:137 , PHE A:187	BINDING SITE FOR RESIDUE DAO A 301
2	AC2	SOFTWARE	TYR A:43 , TYR A:95 , ALA A:106	BINDING SITE FOR RESIDUE DAO A 302
3	AC3	SOFTWARE	SER A:33 , LEU A:34 , GLY A:36 , LYS A:38 , ASN A:39	BINDING SITE FOR RESIDUE K A 303
4	AC4	SOFTWARE	ARG B:30 , TYR B:43 , PHE B:107 , SER B:110 , PHE B:134 , GLU B:137 , ILE B:140 , ILE B:146 , TYR B:181 , PHE B:187 , DAO B:302	BINDING SITE FOR RESIDUE DAO B 301
5	AC5	SOFTWARE	TYR B:43 , LEU B:91 , ILE B:93 , LEU B:98 , ASN B:99 , SER B:102 , ALA B:106 , DAO B:301	BINDING SITE FOR RESIDUE DAO B 302
6	AC6	SOFTWARE	SER B:33 , LEU B:34 , GLY B:36 , LYS B:38 , ASN B:39	BINDING SITE FOR RESIDUE K B 303

(no "SS Bond" information available for 4DOO)

(no "Cis Peptide Bond" information available for 4DOO)

(no "SAP(SNP)/Variant" information available for 4DOO)

(no "PROSITE Motif" information available for 4DOO)

(no "Exon" information available for 4DOO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:203
 aligned with FAP1_ARATH | Q9M1X2 from UniProtKB/Swiss-Prot  Length:279

    Alignment length:203
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275   
           FAP1_ARATH    76 ESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASLAFD 278
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee..ee...eeeeeeeeeeee.....eeeeeeeeeeeehhhhhhhhhhhh...hhhhhhh..hhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.........eeeeeee...eeeeee..eeeeeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4doo A   3 ESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASLAFD 205
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Chain B from PDB  Type:PROTEIN  Length:203
 aligned with FAP1_ARATH | Q9M1X2 from UniProtKB/Swiss-Prot  Length:279

    Alignment length:203
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275   
           FAP1_ARATH    76 ESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASLAFD 278
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee..ee...eeeeeeeeeeee.....eeeeeeeeeeeehhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.........eeeeeee...eeeeee..eeeeeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4doo B   3 ESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASLAFD 205
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4DOO)

(no "CATH Domain" information available for 4DOO)

(no "Pfam Domain" information available for 4DOO)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FAP1_ARATH | Q9M1X2)

molecular function
	GO:0045430	chalcone isomerase activity	Catalysis of the reaction: a chalcone = a flavanone.
	GO:0005504	fatty acid binding	Interacting selectively and non-covalently with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0016872	intramolecular lyase activity	The catalysis of certain rearrangements of a molecule to break or form a ring.
biological process
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0009813	flavonoid biosynthetic process	The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009941	chloroplast envelope	The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.
	GO:0009570	chloroplast stroma	The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

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4doi	CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA CHALCONE ISOMERASE AT3G55120 (ATCHI)
4dok	CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA CHALCONE- ISOMERASE LIKE PROTEIN AT5G05270 (ATCHIL)
4dol	CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA FATTY-ACID BINDING PROTEIN AT1G53520 (ATFAP3)

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