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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDASE (BF3526) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.17 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  23 Jan 12  (Deposition) - 15 Feb 12  (Release) - 15 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.17
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Iga Peptidase M64, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Peptidase (Bf3526) From Bacteroides Fragilis Nctc 9343 At 2. 17 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PEPTIDASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BF3526, BF9343_3433
    Organism Scientific: BACTEROIDES FRAGILIS NCTC 9343
    Organism Taxid: 272559
    Strain: NCTC 9343
    Synonym: PUTATIVE LIPOPROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 105)

Asymmetric Unit (7, 105)
No.NameCountTypeFull Name
12PE6Ligand/IonNONAETHYLENE GLYCOL
2CL15Ligand/IonCHLORIDE ION
3GOL31Ligand/IonGLYCEROL
4MSE30Mod. Amino AcidSELENOMETHIONINE
5NA6Ligand/IonSODIUM ION
6PO45Ligand/IonPHOSPHATE ION
7ZN12Ligand/IonZINC ION
Biological Unit 1 (4, 20)
No.NameCountTypeFull Name
12PE2Ligand/IonNONAETHYLENE GLYCOL
2CL-1Ligand/IonCHLORIDE ION
3GOL6Ligand/IonGLYCEROL
4MSE10Mod. Amino AcidSELENOMETHIONINE
5NA-1Ligand/IonSODIUM ION
6PO42Ligand/IonPHOSPHATE ION
7ZN-1Ligand/IonZINC ION
Biological Unit 2 (4, 31)
No.NameCountTypeFull Name
12PE2Ligand/IonNONAETHYLENE GLYCOL
2CL-1Ligand/IonCHLORIDE ION
3GOL17Ligand/IonGLYCEROL
4MSE10Mod. Amino AcidSELENOMETHIONINE
5NA-1Ligand/IonSODIUM ION
6PO42Ligand/IonPHOSPHATE ION
7ZN-1Ligand/IonZINC ION
Biological Unit 3 (4, 21)
No.NameCountTypeFull Name
12PE2Ligand/IonNONAETHYLENE GLYCOL
2CL-1Ligand/IonCHLORIDE ION
3GOL8Ligand/IonGLYCEROL
4MSE10Mod. Amino AcidSELENOMETHIONINE
5NA-1Ligand/IonSODIUM ION
6PO41Ligand/IonPHOSPHATE ION
7ZN-1Ligand/IonZINC ION

(-) Sites  (74, 74)

Asymmetric Unit (74, 74)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:58 , GLU A:172 , CYS A:175 , ASP A:177 , GLU A:275BINDING SITE FOR RESIDUE NA A 501
02AC2SOFTWAREHIS A:311 , HIS A:315 , ASP A:322 , HOH A:683BINDING SITE FOR RESIDUE ZN A 502
03AC3SOFTWAREGLU A:323 , CYS A:398 , CYS A:409 , CYS A:412BINDING SITE FOR RESIDUE ZN A 503
04AC4SOFTWARETYR A:286 , GLY A:288 , HIS A:311 , GLU A:312 , TYR A:324 , TYR A:326 , TYR A:386 , ASN A:403 , HOH A:826BINDING SITE FOR RESIDUE 2PE A 504
05AC5SOFTWAREHIS A:241 , ARG A:261 , HOH A:723 , HOH A:802 , HIS B:153 , LYS B:155BINDING SITE FOR RESIDUE PO4 A 505
06AC6SOFTWAREHIS A:153 , LYS A:155 , ASP A:267 , HOH A:676 , HOH A:712 , HOH A:858 , HIS B:241 , ARG B:261 , HOH B:772 , HOH B:850BINDING SITE FOR RESIDUE PO4 A 506
07AC7SOFTWAREHIS A:62 , HIS A:63 , GLU A:66 , HOH A:810BINDING SITE FOR RESIDUE GOL A 507
08AC8SOFTWARETHR A:283BINDING SITE FOR RESIDUE CL A 508
09AC9SOFTWAREALA B:58 , GLU B:172 , CYS B:175 , ASP B:177 , GLU B:275 , HOH B:836BINDING SITE FOR RESIDUE NA B 501
10BC1SOFTWAREHIS B:311 , HIS B:315 , ASP B:322BINDING SITE FOR RESIDUE ZN B 502
11BC2SOFTWAREGLU B:323 , CYS B:398 , CYS B:409 , CYS B:412BINDING SITE FOR RESIDUE ZN B 503
12BC3SOFTWAREGLU B:100 , ARG B:255 , TYR B:256 , TYR B:286 , GLY B:288 , HIS B:311 , GLU B:312 , TYR B:324 , PHE B:325 , ASN B:403BINDING SITE FOR RESIDUE 2PE B 504
13BC4SOFTWAREHIS B:62 , HIS B:63 , LEU B:64 , HOH B:907BINDING SITE FOR RESIDUE GOL B 505
14BC5SOFTWARETHR B:114 , ASN B:266 , GLU B:275 , ILE B:277 , ASN B:293 , ALA B:294 , HOH B:644BINDING SITE FOR RESIDUE GOL B 506
15BC6SOFTWAREGLU B:53 , PRO B:147 , HOH B:825BINDING SITE FOR RESIDUE GOL B 507
16BC7SOFTWAREASN B:72 , SER B:92 , ILE B:291 , TYR B:292 , GLY B:319 , LEU B:320 , TRP B:342 , GLU B:343 , HOH B:609 , HOH B:933BINDING SITE FOR RESIDUE GOL B 508
17BC8SOFTWAREARG B:349 , PRO B:367 , HOH B:859BINDING SITE FOR RESIDUE GOL B 509
18BC9SOFTWARETHR B:283 , GLU B:284 , HOH B:918BINDING SITE FOR RESIDUE CL B 510
19CC1SOFTWAREHIS B:163 , GLU E:136 , VAL E:137BINDING SITE FOR RESIDUE CL B 511
20CC2SOFTWAREASN B:133 , LYS B:134BINDING SITE FOR RESIDUE CL B 512
21CC3SOFTWARELYS B:84 , ASP D:24BINDING SITE FOR RESIDUE CL B 513
22CC4SOFTWAREPHE B:352 , ALA B:353 , HOH B:676 , HOH B:793 , ASN D:215BINDING SITE FOR RESIDUE CL B 514
23CC5SOFTWAREALA C:58 , GLU C:172 , CYS C:175 , ASP C:177 , GLU C:275 , HOH C:670BINDING SITE FOR RESIDUE NA C 501
24CC6SOFTWAREHIS C:311 , HIS C:315 , ASP C:322 , HOH C:950BINDING SITE FOR RESIDUE ZN C 502
25CC7SOFTWAREGLU C:323 , CYS C:398 , CYS C:409 , CYS C:412BINDING SITE FOR RESIDUE ZN C 503
26CC8SOFTWARETYR C:256 , TYR C:286 , GLY C:288 , HIS C:311 , GLU C:312 , TYR C:324 , PHE C:325 , TYR C:386 , ASN C:403BINDING SITE FOR RESIDUE 2PE C 504
27CC9SOFTWAREHIS C:241 , ARG C:261 , HOH C:727 , HOH C:820 , HOH C:853 , HIS D:153 , LYS D:155BINDING SITE FOR RESIDUE PO4 C 505
28DC1SOFTWARESER C:169 , GLY C:170 , GLN C:174 , ARG D:135 , GLU D:340 , GLN D:344 , ASN D:351 , SER D:354 , HOH D:744 , HOH D:845BINDING SITE FOR RESIDUE GOL C 506
29DC2SOFTWAREASN C:72 , SER C:92 , ILE C:291 , TYR C:292 , TRP C:342 , GLU C:343 , HOH C:713 , HOH C:795BINDING SITE FOR RESIDUE GOL C 507
30DC3SOFTWAREHIS C:62 , HIS C:63 , LEU C:64BINDING SITE FOR RESIDUE GOL C 508
31DC4SOFTWARETHR C:114 , VAL C:262 , ASN C:266 , GLU C:275 , ALA C:294 , HOH C:612BINDING SITE FOR RESIDUE GOL C 509
32DC5SOFTWAREPRO C:68 , GLN C:344 , HOH C:617 , HOH C:819 , HOH C:884BINDING SITE FOR RESIDUE GOL C 510
33DC6SOFTWAREHIS C:247 , SER C:260 , HOH C:636 , ASP D:49 , GLU D:50BINDING SITE FOR RESIDUE GOL C 511
34DC7SOFTWARETHR C:158 , HIS C:159 , ILE C:160 , LYS D:43BINDING SITE FOR RESIDUE GOL C 512
35DC8SOFTWARETHR C:283 , GLU C:284BINDING SITE FOR RESIDUE CL C 513
36DC9SOFTWAREALA D:58 , GLU D:172 , CYS D:175 , ASP D:177 , GLU D:275 , HOH D:746BINDING SITE FOR RESIDUE NA D 501
37EC1SOFTWAREHIS D:311 , HIS D:315 , ASP D:322 , HOH D:826BINDING SITE FOR RESIDUE ZN D 502
38EC2SOFTWAREGLU D:323 , CYS D:398 , CYS D:409 , CYS D:412BINDING SITE FOR RESIDUE ZN D 503
39EC3SOFTWARETYR D:256 , TYR D:286 , GLY D:288 , HIS D:311 , GLU D:312 , TYR D:324 , PHE D:325 , TYR D:326 , TYR D:386 , ARG D:401 , ASN D:403 , HOH D:982BINDING SITE FOR RESIDUE 2PE D 504
40EC4SOFTWARELYS C:155 , HOH C:783 , HIS D:241 , ARG D:261 , HOH D:702 , HOH D:790BINDING SITE FOR RESIDUE PO4 D 505
41EC5SOFTWAREHIS D:62 , HIS D:63 , LEU D:64 , HOH D:842BINDING SITE FOR RESIDUE GOL D 506
42EC6SOFTWAREGLU B:136 , VAL B:137 , HIS D:163 , GLY D:271 , HOH D:749 , HOH D:782 , HOH D:801BINDING SITE FOR RESIDUE GOL D 507
43EC7SOFTWAREGLU C:103 , LYS C:109 , GLU D:50 , LEU D:51 , ASP D:149 , LEU D:151BINDING SITE FOR RESIDUE GOL D 508
44EC8SOFTWARETHR D:114 , VAL D:262 , ASN D:266 , GLU D:275 , ASN D:293 , ALA D:294BINDING SITE FOR RESIDUE GOL D 509
45EC9SOFTWAREASN D:72 , SER D:92 , ILE D:291 , TYR D:292 , GLY D:319 , LEU D:320 , TRP D:342 , GLU D:343 , GOL D:515 , HOH D:671 , HOH D:822BINDING SITE FOR RESIDUE GOL D 510
46FC1SOFTWAREARG B:135 , GLU B:340 , PRO B:341 , SER B:354 , LYS B:355 , SER D:169 , GLY D:170 , GLN D:174 , HOH D:786BINDING SITE FOR RESIDUE GOL D 511
47FC2SOFTWAREASN C:215 , ARG D:349 , ILE D:350 , ASN D:351 , PHE D:352 , ALA D:353 , GLU D:357BINDING SITE FOR RESIDUE GOL D 512
48FC3SOFTWAREARG D:418 , GLU D:421BINDING SITE FOR RESIDUE GOL D 513
49FC4SOFTWARETHR D:158 , HIS D:159 , ILE D:160 , HOH D:967BINDING SITE FOR RESIDUE GOL D 514
50FC5SOFTWAREGLU D:97 , TYR D:256 , GLY D:289 , GLY D:290 , GLU D:312 , HIS D:315 , GOL D:510 , HOH D:822 , HOH D:826BINDING SITE FOR RESIDUE GOL D 515
51FC6SOFTWARETHR D:283 , GLU D:284BINDING SITE FOR RESIDUE CL D 516
52FC7SOFTWAREHOH D:710BINDING SITE FOR RESIDUE CL D 517
53FC8SOFTWARELYS D:84BINDING SITE FOR RESIDUE CL D 518
54FC9SOFTWAREARG D:349 , HOH D:925BINDING SITE FOR RESIDUE CL D 519
55GC1SOFTWARESER D:212 , LYS D:214 , ASN D:215BINDING SITE FOR RESIDUE CL D 520
56GC2SOFTWAREALA E:58 , GLU E:172 , CYS E:175 , ASP E:177 , GLU E:275BINDING SITE FOR RESIDUE NA E 501
57GC3SOFTWAREHIS E:311 , HIS E:315 , ASP E:322 , HOH E:857BINDING SITE FOR RESIDUE ZN E 502
58GC4SOFTWAREGLU E:323 , CYS E:398 , CYS E:409 , CYS E:412BINDING SITE FOR RESIDUE ZN E 503
59GC5SOFTWARETYR E:286 , HIS E:311 , GLU E:312 , TYR E:324 , PHE E:325 , TYR E:326 , ARG E:401 , ASN E:403BINDING SITE FOR RESIDUE 2PE E 504
60GC6SOFTWAREHIS E:241 , ARG E:261 , HOH E:653 , HOH E:800 , HIS F:153 , LYS F:155 , ASP F:267BINDING SITE FOR RESIDUE PO4 E 505
61GC7SOFTWARESER E:92 , ILE E:291 , TYR E:292 , GLY E:319 , LEU E:320 , TRP E:342 , GLU E:343 , HOH E:604BINDING SITE FOR RESIDUE GOL E 506
62GC8SOFTWARESER B:169 , GLY B:170 , GLN B:174 , ARG E:135 , GLU E:340 , GLN E:344 , SER E:354BINDING SITE FOR RESIDUE GOL E 507
63GC9SOFTWARETHR A:27 , ASN A:28 , THR E:158 , HIS E:159 , HOH E:651BINDING SITE FOR RESIDUE GOL E 508
64HC1SOFTWARETHR E:114 , ASN E:266 , GLU E:275 , ILE E:277 , ASN E:293 , ALA E:294 , HOH E:605BINDING SITE FOR RESIDUE GOL E 509
65HC2SOFTWAREHIS E:62 , HIS E:63 , LEU E:64 , GLU E:66BINDING SITE FOR RESIDUE GOL E 510
66HC3SOFTWARETHR E:283BINDING SITE FOR RESIDUE CL E 511
67HC4SOFTWAREALA F:58 , GLU F:172 , CYS F:175 , ASP F:177 , GLU F:275BINDING SITE FOR RESIDUE NA F 501
68HC5SOFTWAREHIS F:311 , HIS F:315 , ASP F:322 , HOH F:885BINDING SITE FOR RESIDUE ZN F 502
69HC6SOFTWAREGLU F:323 , CYS F:398 , CYS F:409 , CYS F:412BINDING SITE FOR RESIDUE ZN F 503
70HC7SOFTWAREARG F:255 , TYR F:286 , GLY F:288 , GLU F:312 , TYR F:324 , PHE F:325 , TYR F:326 , ASN F:403BINDING SITE FOR RESIDUE 2PE F 504
71HC8SOFTWARESER F:92 , ILE F:291 , TYR F:292 , LEU F:320 , TYR F:335 , TRP F:342 , GLU F:343 , HOH F:659BINDING SITE FOR RESIDUE GOL F 505
72HC9SOFTWAREGLN F:20 , HIS F:62 , HIS F:63 , LEU F:64BINDING SITE FOR RESIDUE GOL F 506
73IC1SOFTWARETHR F:158 , HIS F:159 , HOH F:679 , HOH F:859BINDING SITE FOR RESIDUE GOL F 507
74IC2SOFTWARETHR F:283 , GLU F:284BINDING SITE FOR RESIDUE CL F 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DF9)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Glu A:208 -Pro A:209
2Val A:366 -Pro A:367
3Glu B:208 -Pro B:209
4Val B:366 -Pro B:367
5Glu C:208 -Pro C:209
6Val C:366 -Pro C:367
7Glu D:208 -Pro D:209
8Val D:366 -Pro D:367
9Glu E:208 -Pro E:209
10Val E:366 -Pro E:367
11Glu F:208 -Pro F:209
12Val F:366 -Pro F:367

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DF9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DF9)

(-) Exons   (0, 0)

(no "Exon" information available for 4DF9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:403
 aligned with Q5L9L3_BACFN | Q5L9L3 from UniProtKB/TrEMBL  Length:426

    Alignment length:406
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420      
         Q5L9L3_BACFN    21 NFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK 426
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eeeeeeeeeeeeee....eeeeeeeeeee..................eeeeeee.....eeeeeee.hhhhhhhhhhhhhh..eeeeeeeeeeee...eeeeeeee.....eeeeeeeee.......ee........eeeeee.......eeeeeeee..hhhhhhhhhhhhhhhhhhhh.......hhh.eeeeee..........hhhhh...........hhhhh.......hhhhhhhhhh.....eeeeee......eeee...eeeee....hhhhhhhhhhhhhh.......ee...---..................hhhhhhhhhh........hhhhh.......eeee.eeeeeeee...............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4df9 A  21 NFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVmRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEmETFYKDAAIACEALFSHEPFQSmKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDED---GLYPLNIEPWEQNITTRINFASKWEDmLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRmRTNEYPTFCPVCQRAIQRIIEFYTGK 426
                                    30        40        50        60        70      | 80        90       100       110       120       130       140       150       160       170       180       190       200       210  |    220       230       240       250       260       270       280       290       300       310       320        |-  |    340       350       360       370       380       390       400       410       420      
                                                                                   77-MSE                                                                                                          190-MSE                213-MSE                                                                                                             329 333                       359-MSE                                  400-MSE                      


Chain B from PDB  Type:PROTEIN  Length:403
 aligned with Q5L9L3_BACFN | Q5L9L3 from UniProtKB/TrEMBL  Length:426

    Alignment length:406
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420      
         Q5L9L3_BACFN    21 NFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK 426
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeeeee....eeeeeeeeeee..................eeeeeee.....eeeeeee.hhhhhhhhhhhhhh..eeeeeeeeeeee...eeeeeeee.....eeeeeeeee.......ee........eeeeee.......eeeeeeee..hhhhhhhhhhhhhhhhhhhh.......hhh.eeeeee..........hhhhh...........hhhhh.......hhhhhhhhhh.....eeeeee......eeee...eeeee....hhhhhhhhhhhhhh.......ee...---..................hhhhhhhhhh........hhhhh.......eeee.eeeeeeee...............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4df9 B  21 NFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVmRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEmETFYKDAAIACEALFSHEPFQSmKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDED---GLYPLNIEPWEQNITTRINFASKWEDmLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRmRTNEYPTFCPVCQRAIQRIIEFYTGK 426
                                    30        40        50        60        70      | 80        90       100       110       120       130       140       150       160       170       180       190       200       210  |    220       230       240       250       260       270       280       290       300       310       320        |-  |    340       350       360       370       380       390       400       410       420      
                                                                                   77-MSE                                                                                                          190-MSE                213-MSE                                                                                                             329 333                       359-MSE                                  400-MSE                      


Chain C from PDB  Type:PROTEIN  Length:405
 aligned with Q5L9L3_BACFN | Q5L9L3 from UniProtKB/TrEMBL  Length:426

    Alignment length:407
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       
         Q5L9L3_BACFN    20 QNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK 426
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeeeeee....eeeeeeeeeee..................eeeeeee.....eeeeeee.hhhhhhhhhhhhhh..eeeeeeeeeeee...eeeeeeee.....eeeeeeeee.......ee........eeeeee.......eeeeeeee..hhhhhhhhhhhhhhhhhhhh.......hhh.eeeeee..........hhhhh...........hhhhh.......hhhhhhhhhh.....eeeeee......eeee...eeeee....hhhhhhhhhhhhhh.......ee...--...................hhhhhhhhhh........hhhhh.......eeee.eeeeeeee...............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4df9 C  20 QNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVmRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEmETFYKDAAIACEALFSHEPFQSmKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDED--NGLYPLNIEPWEQNITTRINFASKWEDmLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRmRTNEYPTFCPVCQRAIQRIIEFYTGK 426
                                    29        39        49        59        69       |79        89        99       109       119       129       139       149       159       169       179       189|      199       209   |   219       229       239       249       259       269       279       289       299       309       319       329  |    339       349       359       369       379       389       399|      409       419       
                                                                                    77-MSE                                                                                                          190-MSE                213-MSE                                                                                                             329  |                        359-MSE                                  400-MSE                      
                                                                                                                                                                                                                                                                                                                                                  332                                                                                              


Chain D from PDB  Type:PROTEIN  Length:404
 aligned with Q5L9L3_BACFN | Q5L9L3 from UniProtKB/TrEMBL  Length:426

    Alignment length:408
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418        
         Q5L9L3_BACFN    19 AQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK 426
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh.eeeeeeeeeeeeee....eeeeeeeeeee..................eeeeeee.....eeeeeee.hhhhhhhhhhhhhh..eeeeeeeeeeee...eeeeeeee.....eeeeeeeee.......ee........eeeeee.......eeeeeeee..hhhhhhhhhhhhhhhhhhhh.......hhh.eeeeee..........hhhhh...........hhhhh.......hhhhhhhhhh.....eeeeee......eeee...eeeee....hhhhhhhhhhhhhh.......ee..----..................hhhhhhhhhh........hhhhh.......eeee.eeeeeeee...............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4df9 D  19 AQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVmRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEmETFYKDAAIACEALFSHEPFQSmKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDE----GLYPLNIEPWEQNITTRINFASKWEDmLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRmRTNEYPTFCPVCQRAIQRIIEFYTGK 426
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188 |     198       208    |  218       228       238       248       258       268       278       288       298       308       318       328    |  338       348       358|      368       378       388       398 |     408       418        
                                                                                     77-MSE                                                                                                          190-MSE                213-MSE                                                                                                            328  333                       359-MSE                                  400-MSE                      


Chain E from PDB  Type:PROTEIN  Length:403
 aligned with Q5L9L3_BACFN | Q5L9L3 from UniProtKB/TrEMBL  Length:426

    Alignment length:406
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420      
         Q5L9L3_BACFN    21 NFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK 426
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeeeee....eeeeeeeeeee..................eeeeeee.....eeeeeee.hhhhhhhhhhhhhh..eeeeeeeeeeee...eeeeeeee.....eeeeeeeee.......ee........eeeeee.......eeeeeeee..hhhhhhhhhhhhhhhhhhhh.......hhh.eeeeee..........hhhhh...........hhhhh.......hhhhhhhhhh.....eeeeee......eeee...eeeee....hhhhhhhhhhhhhh.......ee..---...................hhhhhhhhhh........hhhhh.......eeee.eeeeeeee...............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4df9 E  21 NFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVmRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEmETFYKDAAIACEALFSHEPFQSmKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDE---NGLYPLNIEPWEQNITTRINFASKWEDmLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRmRTNEYPTFCPVCQRAIQRIIEFYTGK 426
                                    30        40        50        60        70      | 80        90       100       110       120       130       140       150       160       170       180       190       200       210  |    220       230       240       250       260       270       280       290       300       310       320       | - |     340       350       360       370       380       390       400       410       420      
                                                                                   77-MSE                                                                                                          190-MSE                213-MSE                                                                                                            328 332                        359-MSE                                  400-MSE                      


Chain F from PDB  Type:PROTEIN  Length:403
 aligned with Q5L9L3_BACFN | Q5L9L3 from UniProtKB/TrEMBL  Length:426

    Alignment length:407
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       
         Q5L9L3_BACFN    20 QNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK 426
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhh.eeeeeeeeeeeeee....eeeeeeeeeee..................eeeeeee.....eeeeeee.hhhhhhhhhhhhhh..eeeeeeeeeeee...eeeeeeee.....eeeeeeeee.......ee........eeeeee.......eeeeeeee..hhhhhhhhhhhhhhhhhhhh.......hhh.eeeeee..........hhhhh...........hhhhh.......hhhhhhhhhh.....eeeeee......eeee...eeeee....hhhhhhhhhhhhhh.......ee.----...................hhhhhhhhhh........hhhhhhhh....eeee.eeeeeeee...............hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4df9 F  20 QNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVmRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEmETFYKDAAIACEALFSHEPFQSmKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYD----NGLYPLNIEPWEQNITTRINFASKWEDmLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRmRTNEYPTFCPVCQRAIQRIIEFYTGK 426
                                    29        39        49        59        69       |79        89        99       109       119       129       139       149       159       169       179       189|      199       209   |   219       229       239       249       259       269       279       289       299       309       319       | -  |    339       349       359       369       379       389       399|      409       419       
                                                                                    77-MSE                                                                                                          190-MSE                213-MSE                                                                                                           327  332                        359-MSE                                  400-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DF9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DF9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DF9)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q5L9L3_BACFN | Q5L9L3)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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