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Biol. Unit 2
Info
Asym.Unit (863 KB)
Biol.Unit 1 (287 KB)
Biol.Unit 2 (291 KB)
Biol.Unit 3 (289 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDASE (BF3526) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.17 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
23 Jan 12 (Deposition) - 15 Feb 12 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.17
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Iga Peptidase M64, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Peptidase (Bf3526) From Bacteroides Fragilis Nctc 9343 At 2. 17 A Resolution
To Be Published
[
close entry info
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Hetero Components
(4, 31)
Info
All Hetero Components
1a: NONAETHYLENE GLYCOL (2PEa)
1b: NONAETHYLENE GLYCOL (2PEb)
1c: NONAETHYLENE GLYCOL (2PEc)
1d: NONAETHYLENE GLYCOL (2PEd)
1e: NONAETHYLENE GLYCOL (2PEe)
1f: NONAETHYLENE GLYCOL (2PEf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3ac: GLYCEROL (GOLac)
3ad: GLYCEROL (GOLad)
3ae: GLYCEROL (GOLae)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: SELENOMETHIONINE (MSEa)
4aa: SELENOMETHIONINE (MSEaa)
4ab: SELENOMETHIONINE (MSEab)
4ac: SELENOMETHIONINE (MSEac)
4ad: SELENOMETHIONINE (MSEad)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
4y: SELENOMETHIONINE (MSEy)
4z: SELENOMETHIONINE (MSEz)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
6c: PHOSPHATE ION (PO4c)
6d: PHOSPHATE ION (PO4d)
6e: PHOSPHATE ION (PO4e)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
7d: ZINC ION (ZNd)
7e: ZINC ION (ZNe)
7f: ZINC ION (ZNf)
7g: ZINC ION (ZNg)
7h: ZINC ION (ZNh)
7i: ZINC ION (ZNi)
7j: ZINC ION (ZNj)
7k: ZINC ION (ZNk)
7l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
2
Ligand/Ion
NONAETHYLENE GLYCOL
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
17
Ligand/Ion
GLYCEROL
4
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
5
NA
-1
Ligand/Ion
SODIUM ION
6
PO4
2
Ligand/Ion
PHOSPHATE ION
7
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: CC3 (SOFTWARE)
02: CC4 (SOFTWARE)
03: CC5 (SOFTWARE)
04: CC6 (SOFTWARE)
05: CC7 (SOFTWARE)
06: CC8 (SOFTWARE)
07: CC9 (SOFTWARE)
08: DC1 (SOFTWARE)
09: DC2 (SOFTWARE)
10: DC3 (SOFTWARE)
11: DC4 (SOFTWARE)
12: DC5 (SOFTWARE)
13: DC6 (SOFTWARE)
14: DC7 (SOFTWARE)
15: DC8 (SOFTWARE)
16: DC9 (SOFTWARE)
17: EC1 (SOFTWARE)
18: EC2 (SOFTWARE)
19: EC3 (SOFTWARE)
20: EC4 (SOFTWARE)
21: EC5 (SOFTWARE)
22: EC6 (SOFTWARE)
23: EC7 (SOFTWARE)
24: EC8 (SOFTWARE)
25: EC9 (SOFTWARE)
26: FC1 (SOFTWARE)
27: FC2 (SOFTWARE)
28: FC3 (SOFTWARE)
29: FC4 (SOFTWARE)
30: FC5 (SOFTWARE)
31: FC6 (SOFTWARE)
32: FC7 (SOFTWARE)
33: FC8 (SOFTWARE)
34: FC9 (SOFTWARE)
35: GC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC3
SOFTWARE
LYS B:84 , ASP D:24
BINDING SITE FOR RESIDUE CL B 513
02
CC4
SOFTWARE
PHE B:352 , ALA B:353 , HOH B:676 , HOH B:793 , ASN D:215
BINDING SITE FOR RESIDUE CL B 514
03
CC5
SOFTWARE
ALA C:58 , GLU C:172 , CYS C:175 , ASP C:177 , GLU C:275 , HOH C:670
BINDING SITE FOR RESIDUE NA C 501
04
CC6
SOFTWARE
HIS C:311 , HIS C:315 , ASP C:322 , HOH C:950
BINDING SITE FOR RESIDUE ZN C 502
05
CC7
SOFTWARE
GLU C:323 , CYS C:398 , CYS C:409 , CYS C:412
BINDING SITE FOR RESIDUE ZN C 503
06
CC8
SOFTWARE
TYR C:256 , TYR C:286 , GLY C:288 , HIS C:311 , GLU C:312 , TYR C:324 , PHE C:325 , TYR C:386 , ASN C:403
BINDING SITE FOR RESIDUE 2PE C 504
07
CC9
SOFTWARE
HIS C:241 , ARG C:261 , HOH C:727 , HOH C:820 , HOH C:853 , HIS D:153 , LYS D:155
BINDING SITE FOR RESIDUE PO4 C 505
08
DC1
SOFTWARE
SER C:169 , GLY C:170 , GLN C:174 , ARG D:135 , GLU D:340 , GLN D:344 , ASN D:351 , SER D:354 , HOH D:744 , HOH D:845
BINDING SITE FOR RESIDUE GOL C 506
09
DC2
SOFTWARE
ASN C:72 , SER C:92 , ILE C:291 , TYR C:292 , TRP C:342 , GLU C:343 , HOH C:713 , HOH C:795
BINDING SITE FOR RESIDUE GOL C 507
10
DC3
SOFTWARE
HIS C:62 , HIS C:63 , LEU C:64
BINDING SITE FOR RESIDUE GOL C 508
11
DC4
SOFTWARE
THR C:114 , VAL C:262 , ASN C:266 , GLU C:275 , ALA C:294 , HOH C:612
BINDING SITE FOR RESIDUE GOL C 509
12
DC5
SOFTWARE
PRO C:68 , GLN C:344 , HOH C:617 , HOH C:819 , HOH C:884
BINDING SITE FOR RESIDUE GOL C 510
13
DC6
SOFTWARE
HIS C:247 , SER C:260 , HOH C:636 , ASP D:49 , GLU D:50
BINDING SITE FOR RESIDUE GOL C 511
14
DC7
SOFTWARE
THR C:158 , HIS C:159 , ILE C:160 , LYS D:43
BINDING SITE FOR RESIDUE GOL C 512
15
DC8
SOFTWARE
THR C:283 , GLU C:284
BINDING SITE FOR RESIDUE CL C 513
16
DC9
SOFTWARE
ALA D:58 , GLU D:172 , CYS D:175 , ASP D:177 , GLU D:275 , HOH D:746
BINDING SITE FOR RESIDUE NA D 501
17
EC1
SOFTWARE
HIS D:311 , HIS D:315 , ASP D:322 , HOH D:826
BINDING SITE FOR RESIDUE ZN D 502
18
EC2
SOFTWARE
GLU D:323 , CYS D:398 , CYS D:409 , CYS D:412
BINDING SITE FOR RESIDUE ZN D 503
19
EC3
SOFTWARE
TYR D:256 , TYR D:286 , GLY D:288 , HIS D:311 , GLU D:312 , TYR D:324 , PHE D:325 , TYR D:326 , TYR D:386 , ARG D:401 , ASN D:403 , HOH D:982
BINDING SITE FOR RESIDUE 2PE D 504
20
EC4
SOFTWARE
LYS C:155 , HOH C:783 , HIS D:241 , ARG D:261 , HOH D:702 , HOH D:790
BINDING SITE FOR RESIDUE PO4 D 505
21
EC5
SOFTWARE
HIS D:62 , HIS D:63 , LEU D:64 , HOH D:842
BINDING SITE FOR RESIDUE GOL D 506
22
EC6
SOFTWARE
GLU B:136 , VAL B:137 , HIS D:163 , GLY D:271 , HOH D:749 , HOH D:782 , HOH D:801
BINDING SITE FOR RESIDUE GOL D 507
23
EC7
SOFTWARE
GLU C:103 , LYS C:109 , GLU D:50 , LEU D:51 , ASP D:149 , LEU D:151
BINDING SITE FOR RESIDUE GOL D 508
24
EC8
SOFTWARE
THR D:114 , VAL D:262 , ASN D:266 , GLU D:275 , ASN D:293 , ALA D:294
BINDING SITE FOR RESIDUE GOL D 509
25
EC9
SOFTWARE
ASN D:72 , SER D:92 , ILE D:291 , TYR D:292 , GLY D:319 , LEU D:320 , TRP D:342 , GLU D:343 , GOL D:515 , HOH D:671 , HOH D:822
BINDING SITE FOR RESIDUE GOL D 510
26
FC1
SOFTWARE
ARG B:135 , GLU B:340 , PRO B:341 , SER B:354 , LYS B:355 , SER D:169 , GLY D:170 , GLN D:174 , HOH D:786
BINDING SITE FOR RESIDUE GOL D 511
27
FC2
SOFTWARE
ASN C:215 , ARG D:349 , ILE D:350 , ASN D:351 , PHE D:352 , ALA D:353 , GLU D:357
BINDING SITE FOR RESIDUE GOL D 512
28
FC3
SOFTWARE
ARG D:418 , GLU D:421
BINDING SITE FOR RESIDUE GOL D 513
29
FC4
SOFTWARE
THR D:158 , HIS D:159 , ILE D:160 , HOH D:967
BINDING SITE FOR RESIDUE GOL D 514
30
FC5
SOFTWARE
GLU D:97 , TYR D:256 , GLY D:289 , GLY D:290 , GLU D:312 , HIS D:315 , GOL D:510 , HOH D:822 , HOH D:826
BINDING SITE FOR RESIDUE GOL D 515
31
FC6
SOFTWARE
THR D:283 , GLU D:284
BINDING SITE FOR RESIDUE CL D 516
32
FC7
SOFTWARE
HOH D:710
BINDING SITE FOR RESIDUE CL D 517
33
FC8
SOFTWARE
LYS D:84
BINDING SITE FOR RESIDUE CL D 518
34
FC9
SOFTWARE
ARG D:349 , HOH D:925
BINDING SITE FOR RESIDUE CL D 519
35
GC1
SOFTWARE
SER D:212 , LYS D:214 , ASN D:215
BINDING SITE FOR RESIDUE CL D 520
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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