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(-) Description

Title :  COMPUTATIONALLY DESIGNED SELF-ASSEMBLING TETRAHEDRON PROTEIN, T308, CRYSTALLIZED IN SPACE GROUP F23
 
Authors :  M. R. Sawaya, N. P. King, W. Sheffler, D. Baker, T. O. Yeates
Date :  17 Jan 12  (Deposition) - 06 Jun 12  (Release) - 13 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Self Assembling Tetrahedron Design, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. P. King, W. Sheffler, M. R. Sawaya, B. S. Vollmar, J. P. Sumida, I. Andre, T. Gonen, T. O. Yeates, D. Baker
Computational Design Of Self-Assembling Protein Nanomaterials With Atomic Level Accuracy.
Science V. 336 1171 2012
PubMed-ID: 22654060  |  Reference-DOI: 10.1126/SCIENCE.1219364

(-) Compounds

Molecule 1 - PUTATIVE ACETYLTRANSFERASE SACOL2570
    Chains: A
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SACOL2570
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 46170

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4DCL)

(-) Sites  (0, 0)

(no "Site" information available for 4DCL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DCL)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ile A:65 -Pro A:66
2Asn A:176 -Pro A:177

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DCL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DCL)

(-) Exons   (0, 0)

(no "Exon" information available for 4DCL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:188
 aligned with ATRF2_STAAC | Q5HCZ5 from UniProtKB/Swiss-Prot  Length:199

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
          ATRF2_STAAC     1 MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL 188
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh...ee...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....eee...eee.....eee...eee...eeee....eee...eee....eee.ee...hhhhhhh.eeee..eee....ee....ee....ee....ee....ee.......eeee....eeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dcl A   1 MTEKEKMLAEKWYDANFDQTLINERLRAKVICFALNHTNPSATLKRKVLIDALFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL 188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DCL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DCL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DCL)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (ATRF2_STAAC | Q5HCZ5)
molecular function
    GO:0016407    acetyltransferase activity    Catalysis of the transfer of an acetyl group to an acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).

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  Cis Peptide Bonds
    Asn A:176 - Pro A:177   [ RasMol ]  
    Ile A:65 - Pro A:66   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATRF2_STAAC | Q5HCZ5: 3ftt 3v4e 4egg 5u2k 5v0z

(-) Related Entries Specified in the PDB File

3v4e UNMUTATED, NATURAL PROTEIN