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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE GALACTOSIDE O-ACETYLTRANSFERASE IN COMPLEX WITH COA

Authors :   A. A. Knapik, I. A. Shumilin, H. -B. Luo, M. Chruszcz, M. D. Zimmerman, M. Cymborowski, W. F. Anderson, W. Minor, Center For Structural Ge Infectious Diseases (Csgid)

Date :   14 Dec 11 (Deposition) - 11 Jan 12 (Release) - 15 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Galactoside O-Acetyltransferase, Coa, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. B. Luo, A. A. Knapik, J. J. Petkowski, M. Demas, I. A. Shumilin, H. Zheng, M. Chruszcz, W. Minor
Biophysical Analysis Of The Putative Acetyltransferase Sacol2570 From Methicillin-Resistant Staphylococcus Aureus.
J. Struct. Funct. Genom. V. 14 97 2013
PubMed-ID: 23963951 | Reference-DOI: 10.1007/S10969-013-9158-6

Molecule 1 - GALACTOSIDE O-ACETYLTRANSFERASE
	Chains	:	A, B, C
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21DE3RIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SACOL2570
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
	Organism Taxid	:	93062
	Strain	:	COL
	Synonym	:	ACETYLTRANSFERASE SACOL2570

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 6)

No.	Name	Count	Type	Full Name
1	COA	3	Ligand/Ion	COENZYME A
2	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:40 , SER A:64 , ILE A:65 , LYS B:29 , CYS B:32 , PHE B:33 , ASP B:68	BINDING SITE FOR RESIDUE PEG A 200
2	AC2	SOFTWARE	THR A:96 , GLY A:98 , HIS A:132 , ILE A:133 , GLY A:134 , SER A:135 , THR A:150 , ILE A:151	BINDING SITE FOR RESIDUE PGE A 201
3	AC3	SOFTWARE	MET A:90 , TYR A:110 , ALA A:112 , HIS A:114 , LEU A:146 , PRO A:147 , THR A:164 , LYS A:165 , ASN A:176 , HOH A:224 , HOH A:246 , TRP C:138 , GLY C:140 , GLY C:141 , GLY C:158 , ALA C:159 , VAL C:174 , ARG C:182	BINDING SITE FOR RESIDUE COA A 202
4	AC4	SOFTWARE	ARG A:25 , LYS A:29 , ASP A:70 , TYR A:88 , ASN C:84	BINDING SITE FOR RESIDUE SO4 A 203
5	AC5	SOFTWARE	TRP B:138 , GLY B:140 , GLY B:141 , GLY B:158 , ALA B:159 , VAL B:174 , ARG B:182 , HOH B:206 , HOH B:262 , MET C:90 , TYR C:110 , ALA C:112 , HIS C:114 , LEU C:146 , THR C:164 , LYS C:165 , ASN C:176	BINDING SITE FOR RESIDUE COA B 200
6	AC6	SOFTWARE	TRP A:138 , GLY A:140 , GLY A:141 , GLY A:158 , ALA A:159 , VAL A:174 , MET B:90 , TYR B:110 , ALA B:112 , HIS B:114 , LEU B:146 , THR B:164 , LYS B:165 , ASN B:176 , HOH B:208 , HOH B:230 , HOH B:238	BINDING SITE FOR RESIDUE COA B 201

(no "SS Bond" information available for 3V4E)

Asymmetric/Biological Unit

No.	Residues
1	Ile A:65	-	Pro A:66
2	Asn A:176	-	Pro A:177
3	Ile B:65	-	Pro B:66
4	Asn B:176	-	Pro B:177
5	Ile C:65	-	Pro C:66
6	Asn C:176	-	Pro C:177

(no "SAP(SNP)/Variant" information available for 3V4E)

(no "PROSITE Motif" information available for 3V4E)

(no "Exon" information available for 3V4E)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:188
 aligned with ATRF2_STAAC | Q5HCZ5 from UniProtKB/Swiss-Prot  Length:199

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
          ATRF2_STAAC     1 MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL 188
               SCOP domains d3v4ea_ A: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh...ee...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....eee...eee.....eee...eee...eeee....eee...eee....eee.ee...hhhhhhh.eeee..eee...eee....ee....ee....ee....ee.......eeee....eeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v4e A   1 MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL 188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain B from PDB  Type:PROTEIN  Length:188
 aligned with ATRF2_STAAC | Q5HCZ5 from UniProtKB/Swiss-Prot  Length:199

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
          ATRF2_STAAC     1 MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL 188
               SCOP domains d3v4eb_ B: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh...ee...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....eee...eee.....eee...eee...eeee....eee...eee....eee.ee...hhhhhhh.eeee..eee...eee....ee....ee....ee....ee.......eeee....eeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v4e B   1 MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL 188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain C from PDB  Type:PROTEIN  Length:188
 aligned with ATRF2_STAAC | Q5HCZ5 from UniProtKB/Swiss-Prot  Length:199

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
          ATRF2_STAAC     1 MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL 188
               SCOP domains d3v4ec_ C: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh...ee...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....eee...eee.....eee...eee...eeee....eee...eee....eee.ee...hhhhhhh.eeee..eee...eee....ee....ee....ee....ee.......eeee....eeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v4e C   1 MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL 188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Single-stranded left-handed beta-helix (154)

Superfamily: Trimeric LpxA-like enzymes (147)

Family: automated matches (55)

Protein domain: automated matches (55)

Staphylococcus aureus [TaxId: 93062] (2)

1a	d3v4ea_	A:
1b	d3v4eb_	B:
1c	d3v4ec_	C:

(no "CATH Domain" information available for 3V4E)

(no "Pfam Domain" information available for 3V4E)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (ATRF2_STAAC | Q5HCZ5)


GO:0016407	acetyltransferase activity	Catalysis of the transfer of an acetyl group to an acceptor molecule.
GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Asn A:176 - Pro A:177	[ RasMol ]
		Asn B:176 - Pro B:177	[ RasMol ]
		Asn C:176 - Pro C:177	[ RasMol ]
		Ile A:65 - Pro A:66	[ RasMol ]
		Ile B:65 - Pro B:66	[ RasMol ]
		Ile C:65 - Pro C:66	[ RasMol ]

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	ATRF2_STAAC \| Q5HCZ5	:	3ftt 4dcl 4egg 5u2k 5v0z

Description

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Ligands, Modified Residues, Ions (4, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

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