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(-) Description

Title :  STRUCTURE OF THE TYPE III SECRETION SYSTEM PROTEIN
 
Authors :  A. M. Gamez, P. Ghosh
Date :  12 Jan 12  (Deposition) - 26 Sep 12  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Fha Domain, Type Iii Secretion Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Gamez, R. Mukerjea, M. Alayyoubi, M. Ghassemian, P. Ghosh
Structure And Interactions Of The Cytoplasmic Domain Of The Yersinia Type Iii Secretion Protein Yscd.
J. Bacteriol. V. 194 5949 2012
PubMed-ID: 22942247  |  Reference-DOI: 10.1128/JB.00513-12

(-) Compounds

Molecule 1 - YSCD; PUTATIVE TYPE III SECRETION PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: CYTOPLASMIC DOMAIN, FHA DOMAIN
    Gene: PYV0080, YSCD
    Organism Scientific: YERSINIA PSEUDOTUBERCULOSIS
    Organism Taxid: 633
    Strain: 126

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4D9V)

(-) Sites  (0, 0)

(no "Site" information available for 4D9V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D9V)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1His A:21 -Gly A:22

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D9V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D9V)

(-) Exons   (0, 0)

(no "Exon" information available for 4D9V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:107
 aligned with Q663I6_YERPS | Q663I6 from UniProtKB/TrEMBL  Length:419

    Alignment length:107
                                    11        21        31        41        51        61        71        81        91       101       
         Q663I6_YERPS     2 SWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT 108
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhh..eeee..eeeeee.......ee..........eeeee....eeeeee...eee..ee............eee..eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 4d9v A   2 SWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT 108
                                    11        21        31        41        51        61        71        81        91       101       


Chain B from PDB  Type:PROTEIN  Length:108
 aligned with Q663I6_YERPS | Q663I6 from UniProtKB/TrEMBL  Length:419

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
         Q663I6_YERPS     1 MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT 108
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.hhhhh..eeee..eeeeee.......ee..........eeeeee..eeeeeee....ee..ee............eee..eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4d9v B   1 VSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT 108
                                    10        20        30        40        50        60        70        80        90       100
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D9V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D9V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D9V)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q663I6_YERPS | Q663I6)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Cis Peptide Bonds
    His A:21 - Gly A:22   [ RasMol ]  
 
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 Related Entries

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(-) Related Entries Specified in the PDB File

2xxs TYPE III SECRETION FHA DOMAIN CONTAINING PROTEIN