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(-) Description

Title :  THE STRUCTURE OF THE CATALYTIC DOMAIN OF NCLPMO9C FROM THE FILAMENTOUS FUNGUS NEUROSPORA CRASSA
 
Authors :  A. S. Borisova, T. Isaksen, M. Sandgren, M. Sorlie, V. G. H. Eijsink, M. Dimarogona
Date :  27 Nov 14  (Deposition) - 22 Jul 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Oxidoreductase, Catalytic Domain, Hemicellulose Active, Aa9 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Borisova, T. Isaksen, M. Dimarogona, A. A. Kognole, G. Mathiesen A. Varnai, A. K. Rohr, C. Payne, M. Sorlie, M. Sandgren, V. G. H. Eijsink, M. Sorlie
Structural And Functional Characterization Of A Lytic Polysaccharide Monooxygenase With Broad Substrate Specificity
J. Biol. Chem. V. 290 22955 2015
PubMed-ID: 26178376  |  Reference-DOI: 10.1074/JBC.M115.660183

(-) Compounds

Molecule 1 - ENDOGLUCANASE II
    Chains: A, B
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPINK-GAPHC
    Expression System Strain: PICHIAPINK STRAIN4
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Fragment: AA9, RESIDUES 17-243
    Gene: GH61-3, NCU02916
    Organism Scientific: NEUROSPORA CRASSA (STRAIN ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
    Organism Taxid: 367110
    Other Details: CATALYTIC DOMAIN OF NCLPMO9C
    Strain: ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3ZN6Ligand/IonZINC ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2GOL-1Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:1 , HIS A:83 , ACT A:1231 , ACT A:1232 , HOH A:2001BINDING SITE FOR RESIDUE ZN A1228
02AC2SOFTWAREHIS B:1 , HIS B:83 , TYR B:166 , ACT B:1231 , ACT B:1232BINDING SITE FOR RESIDUE ZN B1228
03AC3SOFTWAREHIS A:64 , HOH A:2091 , HOH A:2092BINDING SITE FOR RESIDUE ZN A1229
04AC4SOFTWAREHIS B:64 , HOH B:2076 , HOH B:2187BINDING SITE FOR RESIDUE ZN B1229
05AC5SOFTWAREASP A:74 , HOH A:2098 , HOH A:2099 , HOH A:2103 , HOH A:2104BINDING SITE FOR RESIDUE ZN A1230
06AC6SOFTWAREASP B:74BINDING SITE FOR RESIDUE ZN B1230
07AC7SOFTWAREHIS B:1 , HIS B:64 , ASP B:76 , ILE B:79 , ALA B:80 , HIS B:83 , ZN B:1228 , ACT B:1232BINDING SITE FOR RESIDUE ACT B1231
08AC8SOFTWAREHIS A:1 , HIS A:64 , ASP A:76 , ILE A:79 , ALA A:80 , HIS A:83 , ZN A:1228 , ACT A:1232 , HOH A:2001BINDING SITE FOR RESIDUE ACT A1231
09AC9SOFTWAREHIS A:1 , HIS A:83 , HIS A:155 , ZN A:1228 , ACT A:1231 , HOH A:2001 , HOH A:2056 , GLY B:208 , LYS B:209BINDING SITE FOR RESIDUE ACT A1232
10BC1SOFTWAREGLY A:208 , HOH A:2055 , HOH A:2221 , HIS B:1 , HIS B:83 , HIS B:155 , GLN B:164 , ZN B:1228 , ACT B:1231 , HOH B:2141BINDING SITE FOR RESIDUE ACT B1232
11BC2SOFTWAREASN A:117 , HIS B:60 , ILE B:87 , ALA B:111 , ALA B:113 , SER B:132 , TYR B:133 , PHE B:134 , HOH B:2129BINDING SITE FOR RESIDUE ACT B1233
12BC3SOFTWAREGLY B:114 , SER B:116 , LYS B:119 , TRP B:120 , ASP B:124BINDING SITE FOR RESIDUE ACT B1234
13BC4SOFTWAREASP B:74 , ALA B:75 , ASP B:76 , HOH B:2081 , HOH B:2188BINDING SITE FOR RESIDUE ACT B1235
14BC5SOFTWAREHIS A:60 , ILE A:87 , VAL A:89 , SER A:132 , TYR A:133BINDING SITE FOR RESIDUE ACT A1233
15BC6SOFTWARELEU A:115 , ASN A:117 , GLY A:118 , PRO A:216 , HOH A:2142 , HOH A:2145 , HOH A:2223 , GLU B:112 , LEU B:224 , HOH B:2112BINDING SITE FOR RESIDUE GOL A1234
16BC7SOFTWAREASN A:173 , THR A:175 , HOH A:2184 , ASN B:173 , HOH B:2071 , HOH B:2147BINDING SITE FOR RESIDUE GOL A1235

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:39 -A:169
2A:139 -A:227
3B:39 -B:169
4B:139 -B:227

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asn A:77 -Pro A:78
2Phe A:188 -Pro A:189
3Asn B:77 -Pro B:78
4Phe B:188 -Pro B:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D7V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D7V)

(-) Exons   (0, 0)

(no "Exon" information available for 4D7V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..ee......eeee...........hhhhhh.eee.....eeee...eeeeeee..hhhhhh...............eeeeeee.............eeeeeee.ee..eehhhhhhhh..eeeee.......eeeeeeeeeee..........eeeeeeeeeeee...................................hhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d7v A   1 HTIFQKVSVNGADQGQLKGIRAPANNNPVTDVMSSDIICNAVTMKDSNVLTVPAGAKVGHFWGHEIGGAAGPNDADNPIAASHKGPIMVYLAKVDNAATTGTSGLKWFKVAEAGLSNGKWAVDDLIANNGWSYFDMPTCIAPGQYLMRAELIALHNAGSQAGAQFYIGCAQINVTGGGSASPSNTVSFPGAYSASDPGILINIYGGSGKTDNGGKPYQIPGPALFTC 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       


Chain B from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..ee......ee.............hhhhhh.........eeee...eeeeeee..hhhhhh...............eeeeeee.............eeeeeee.ee..eehhhhhhhh..eeeee.......eeeeeeeeeee..........eeeeeeeeeeee................................hhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d7v B   1 HTIFQKVSVNGADQGQLKGIRAPANNNPVTDVMSSDIICNAVTMKDSNVLTVPAGAKVGHFWGHEIGGAAGPNDADNPIAASHKGPIMVYLAKVDNAATTGTSGLKWFKVAEAGLSNGKWAVDDLIANNGWSYFDMPTCIAPGQYLMRAELIALHNAGSQAGAQFYIGCAQINVTGGGSASTVSFPGAYSASDPGILINIYGGSGKTDNGGKPYQIPGPALFTC 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180||     193       203       213       223    
                                                                                                                                                                                                              181|                                          
                                                                                                                                                                                                               185
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D7V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D7V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D7V)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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4d7u THE STRUCTURE OF THE CATALYTIC DOMAIN OF NCLPMO9C FROM THE FILAMENTOUS FUNGUS NEUROSPORA CRASSA