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(-) Description

Title :  THE STRUCTURE OF THE CATALYTIC DOMAIN OF NCLPMO9C FROM THE FILAMENTOUS FUNGUS NEUROSPORA CRASSA
 
Authors :  A. S. Borisova, T. Isaksen, G. Mathiesen, M. Sorlie, M. Sandgren, V. G. H M. Dimarogona
Date :  27 Nov 14  (Deposition) - 22 Jul 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Oxidoreductase, Lytic Monooxygenase, Hemicellulose Active, Aa9 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Borisova, T. Isaksen, M. Dimarogona, A. A. Kognole, G. Mathiesen A. Varnai, A. K. Rohr, C. Payne, M. Sorlie, M. Sandgren, V. G. H. Eijsink, M. Sorlie
Structural And Functional Characterization Of A Lytic Polysaccharide Monooxygenase With Broad Substrate Specificity
J. Biol. Chem. V. 290 22955 2015
PubMed-ID: 26178376  |  Reference-DOI: 10.1074/JBC.M115.660183

(-) Compounds

Molecule 1 - ENDOGLUCANASE II
    Atcc: 24698
    Chains: A, B
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Plasmid: PPINK-GAPHC
    Expression System Strain: PICHIAPINK STRAIN4
    Expression System Taxid: 4922
    Fragment: CATALYTIC DOMAIN, RESIDUES 17-243
    Organism Scientific: NEUROSPORA CRASSA
    Organism Taxid: 367110
    Strain: OR74A
    Synonym: NCLPMO9C-N

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1CU2Ligand/IonCOPPER (II) ION
2GOL5Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2GOL2Ligand/IonGLYCEROL
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2GOL3Ligand/IonGLYCEROL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:1 , HIS A:83 , GLN A:164 , TYR A:166BINDING SITE FOR RESIDUE CU A 300
2AC2SOFTWAREHIS B:1 , HIS B:83 , TYR B:166BINDING SITE FOR RESIDUE CU B 300
3AC3SOFTWARELEU A:115 , ASN A:117 , GLY A:118 , LYS A:215 , PRO A:216 , HOH A:2170 , HOH A:2173 , HOH A:2270 , GLU B:112 , LEU B:224 , HOH B:2158BINDING SITE FOR RESIDUE GOL A1228
4AC4SOFTWAREASN A:117 , HIS B:60 , ILE B:87 , ALA B:111 , GLU B:112 , ALA B:113 , SER B:132 , TYR B:133 , PHE B:134 , HOH B:2274BINDING SITE FOR RESIDUE GOL B1228
5AC5SOFTWAREGLU A:112 , ILE A:219 , LEU A:224 , HOH A:2166 , HOH A:2167 , SER B:116 , ASN B:117 , GLY B:118 , HOH B:2275 , HOH B:2276BINDING SITE FOR RESIDUE GOL B1229
6AC6SOFTWARESER B:8 , GLY B:11 , TRP B:131 , TYR B:133 , HOH B:2028 , HOH B:2179BINDING SITE FOR RESIDUE GOL B1230
7AC7SOFTWARESER A:8 , GLY A:11 , TRP A:131 , TYR A:133BINDING SITE FOR RESIDUE GOL A1229

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:39 -A:169
2A:139 -A:227
3B:39 -B:169
4B:139 -B:227

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asn A:77 -Pro A:78
2Phe A:188 -Pro A:189
3Asn B:77 -Pro B:78
4Phe B:188 -Pro B:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D7U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D7U)

(-) Exons   (0, 0)

(no "Exon" information available for 4D7U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..ee......eeee...........hhhhhh.eee.....eeee...eeeeeee..hhhhh................eeeeeee.............eeeeeee.ee..eehhhhhhhh..eeeee.......eeeeeeeeeee..........eeeeeeeeeeee...................................hhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d7u A   1 HTIFQKVSVNGADQGQLKGIRAPANNNPVTDVMSSDIICNAVTMKDSNVLTVPAGAKVGHFWGHEIGGAAGPNDADNPIAASHKGPIMVYLAKVDNAATTGTSGLKWFKVAEAGLSNGKWAVDDLIANNGWSYFDMPTCIAPGQYLMRAELIALHNAGSQAGAQFYIGCAQINVTGGGSASPSNTVSFPGAYSASDPGILINIYGGSGKTDNGGKPYQIPGPALFTC 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       


Chain B from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..ee......eeee...........hhhhhh.eee.....eeee...eeeeeee.......................eeeeeee.............eeeeeee.ee..eehhhhhhhh..eeeee.......eeeeeeeeeee..........eeeeeeeeeeee...................................hhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d7u B   1 HTIFQKVSVNGADQGQLKGIRAPANNNPVTDVMSSDIICNAVTMKDSNVLTVPAGAKVGHFWGHEIGGAAGPNDADNPIAASHKGPIMVYLAKVDNAATTGTSGLKWFKVAEAGLSNGKWAVDDLIANNGWSYFDMPTCIAPGQYLMRAELIALHNAGSQAGAQFYIGCAQINVTGGGSASPSNTVSFPGAYSASDPGILINIYGGSGKTDNGGKPYQIPGPALFTC 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D7U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D7U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D7U)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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    Asn A:77 - Pro A:78   [ RasMol ]  
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        Q7SHI8_NEUCR | Q7SHI8: 4d7v

(-) Related Entries Specified in the PDB File

4d7v THE STRUCTURE OF THE CATALYTIC DOMAIN OF NCLPMO9C FROM THE FILAMENTOUS FUNGUS NEUROSPORA CRASSA