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(-) Description

Title :  FOCAL ADHESION KINASE CATALYTIC DOMAIN
 
Authors :  J. Le Coq, A. Lin, D. Lietha
Date :  31 Oct 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Kinase Inhibitor, Atp-Binding, Integrin Signaling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhou, A. Bronowska, J. Le Coq, D. Lietha, F. Grater
Allosteric Regulation Of Focal Adhesion Kinase By Pip2 And Atp.
Biophys. J. V. 108 698 2015
PubMed-ID: 25650936  |  Reference-DOI: 10.1016/J.BPJ.2014.11.3454

(-) Compounds

Molecule 1 - FOCAL ADHESION KINASE 1
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HIGH FIVE
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PACG2T
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: KINASE DOMAIN, RESIDUES 411-686
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: FADK 1, FOCAL ADHESION KINASE-RELATED NONKINASE, FRNK, P41/P43FRNK, PROTEIN-TYROSINE KINASE 2, P125FAK, PP125FAK

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1DMS1Ligand/IonDIMETHYL SULFOXIDE
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1DMS1Ligand/IonDIMETHYL SULFOXIDE
2SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1DMS-1Ligand/IonDIMETHYL SULFOXIDE
2SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:621 , GLN A:624 , ASP B:519 , LEU B:520 , ASN B:646 , HOH B:2036BINDING SITE FOR RESIDUE SO4 B1687
2AC2SOFTWAREARG B:508 , GLN B:512 , LYS B:621BINDING SITE FOR RESIDUE SO4 B1688
3AC3SOFTWARESER B:601 , ARG B:668 , HOH B:2063 , HOH B:2104 , HOH B:2106 , HOH B:2115BINDING SITE FOR RESIDUE SO4 B1689
4AC4SOFTWAREHIS B:480 , THR B:532 , LYS B:673 , HOH B:2038 , HOH B:2110BINDING SITE FOR RESIDUE SO4 B1690
5AC5SOFTWAREHIS A:482 , GLN A:529BINDING SITE FOR RESIDUE DMS A1687

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D4Y)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:493 -Pro A:494
2Asn B:493 -Pro B:494

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D4Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D4Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4D4Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeee......eeeeeeee..eeeeeeeeee.....hhhhhhhhhhhhhhhh.........eeeee.....eeeee....eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..eeee.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d4y A 415 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKLQ 686
                                   424       434       444       454       464       474       484       494       504       514       524       534       544       554       564||     591       601       611       621       631       641       651       661       671       681     
                                                                                                                                                                                565|                                                                                                       
                                                                                                                                                                                 583                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeee....eeeeeeee.......eeeeeeee....hhhhhhhhhhhhhhhh.........eeeee.....eeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..eeee...hhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d4y B 415 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKLQ 686
                                   424       434       444       454       464       474       484       494       504       514       524       534       544       554       564      |586       596       606       616       626       636       646       656       666       676       686
                                                                                                                                                                                      571|                                                                                                      
                                                                                                                                                                                       584
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D4Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D4Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D4Y)

(-) Gene Ontology  (50, 50)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAK1_CHICK | Q00944: 1ktm 1pv3 1qvx 2aeh 2al6 2j0j 2j0k 2j0l 2j0m 2jkk 2jkm 2jko 2jkq 2l6f 2l6g 2l6h 3zdt 4brx 4c7t 4cye 4d4r 4d4s 4d4v 4d55 4d58 4d5h 4d5k

(-) Related Entries Specified in the PDB File

4d4r FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d4s FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d4v FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d55 FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d58 FOCAL ADHESION KINASE CATALYTIC DOMAIN IN COMPLEX WITH BIS-ANILINO PYRIMIDINE INHIBITOR
4d5h FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d5k FOCAL ADHESION KINASE CATALYTIC DOMAIN