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(-) Description

Title :  FOCAL ADHESION KINASE CATALYTIC DOMAIN
 
Authors :  J. Le Coq, A. Lin, D. Lietha
Date :  05 Nov 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Kinase Inhibitor, Atp-Binding, Integrin Signaling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhou, A. Bronowska, J. Le Coq, D. Lietha, F. Grater
Allosteric Regulation Of Focal Adhesion Kinase By Pip2 And Atp.
Biophys. J. V. 108 698 2015
PubMed-ID: 25650936  |  Reference-DOI: 10.1016/J.BPJ.2014.11.3454

(-) Compounds

Molecule 1 - FOCAL ADHESION KINASE
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: TRICHOPLUSIA
    Expression System Cell Line: HIGH FIVE
    Expression System Plasmid: PACG2T
    Expression System Taxid: 7110
    Expression System Vector Type: BACULOVIRUS
    Fragment: KINASE DOMAIN, UNP RESIDUES 411-686
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: FADK 1, FOCAL ADHESION KINASE-RELATED NONKINASE, FRNK, P41/ P43FRNK, PROTEIN-TYROSINE KINASE 2, P125FAK, PP125FAK, FOCAL ADHES ION KINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1DMS1Ligand/IonDIMETHYL SULFOXIDE
2SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:621 , GLN A:624 , ASP B:519 , LEU B:520 , ASN B:646 , HOH B:2034BINDING SITE FOR RESIDUE SO4 B1687
2AC2SOFTWARESER A:601 , ARG A:668 , HOH A:2065 , HOH A:2097BINDING SITE FOR RESIDUE SO4 A1687
3AC3SOFTWAREARG B:508 , GLN B:512BINDING SITE FOR RESIDUE SO4 B1688
4AC4SOFTWAREHIS B:480 , LYS B:673 , HOH B:2036BINDING SITE FOR RESIDUE SO4 B1689
5AC5SOFTWAREHIS A:482 , GLN A:529 , HOH A:2106 , HOH A:2107BINDING SITE FOR RESIDUE DMS A1688

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D5K)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asn A:493 -Pro A:494
2Pro B:447 -Ala B:448
3Asn B:493 -Pro B:494

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D5K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D5K)

(-) Exons   (0, 0)

(no "Exon" information available for 4D5K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeee......eeeeee.......eeeeeee.....hhhhhhhhhhhhhhhhh........eeeee.....eeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..eeee.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d5k A 415 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKLQ 686
                                   424       434       444       454       464       474       484       494       504       514       524       534       544       554       564||     591       601       611       621       631       641       651       661       671       681     
                                                                                                                                                                                565|                                                                                                       
                                                                                                                                                                                 583                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhh.eeeeeeee....eeeeeeee.......eeeeeeee....hhhhhhhhhhhhhhhh.........eeeee.....eeeee....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..eeee.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d5k B 414 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKLQ 686
                                   423       433       443       453       463       473       483       493       503       513       523       533       543       553       563  ||   590       600       610       620       630       640       650       660       670       680      
                                                                                                                                                                                  566|                                                                                                      
                                                                                                                                                                                   584
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D5K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D5K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D5K)

(-) Gene Ontology  (50, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:493 - Pro A:494   [ RasMol ]  
    Asn B:493 - Pro B:494   [ RasMol ]  
    Pro B:447 - Ala B:448   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAK1_CHICK | Q00944: 1ktm 1pv3 1qvx 2aeh 2al6 2j0j 2j0k 2j0l 2j0m 2jkk 2jkm 2jko 2jkq 2l6f 2l6g 2l6h 3zdt 4brx 4c7t 4cye 4d4r 4d4s 4d4v 4d4y 4d55 4d58 4d5h

(-) Related Entries Specified in the PDB File

4d4r FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d4s FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d4v FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d4y FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d55 FOCAL ADHESION KINASE CATALYTIC DOMAIN
4d58 FOCAL ADHESION KINASE CATALYTIC DOMAIN IN COMPLEX WITH BIS-ANILINO PYRIMIDINE INHIBITOR
4d5h FOCAL ADHESION KINASE CATALYTIC DOMAIN