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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  NEGATIVE-STAIN ELECTRON MICROSCOPY OF E. COLI CLPB MUTANT E432A (BAP FORM BOUND TO CLPP)
 
Authors :  M. Carroni, E. Kummer, Y. Oguchi, D. K. Clare, P. Wendler, I. Sinning, J. A. Mogk, B. Bukau, H. R. Saibil
Date :  12 May 14  (Deposition) - 04 Jun 14  (Release) - 11 Jun 14  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  18.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Chaperone, Disaggregase, Clpb, Bap, Coiled-Coil Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Carroni, E. Kummer, Y. Oguchi, P. Wendler, D. K. Clare, I. Sinning, J. Kopp, A. Mogk, B. Bukau, H. R. Saibil
Head-To-Tail Interactions Of The Coiled-Coil Domains Regulate Clpb Activity And Cooperation With Hsp70 In Protein Disaggregation.
Elife V. 3 02481 2014
PubMed-ID: 24843029  |  Reference-DOI: 10.7554/ELIFE.02481

(-) Compounds

Molecule 1 - CLPB
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDS56
    Expression System Strain: MC4100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: THE PROTEIN IS ENGINEERED TO BIND TO CLPP.

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 108)

Asymmetric/Biological Unit (1, 108)
No.NameCountTypeFull Name
1MSE108Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4D2Q)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D2Q)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Val A:548 -Ser A:549
2Val B:548 -Ser B:549
3Val C:548 -Ser C:549
4Val D:548 -Ser D:549
5Val E:548 -Ser E:549
6Val F:548 -Ser F:549

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D2Q)

(-) PROSITE Motifs  (2, 12)

Asymmetric/Biological Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLPAB_1PS00870 Chaperonins clpA/B signature 1.CLPB_ECOLI294-306
 
 
 
 
 		  6A:294-306
B:294-306
C:294-306
D:294-306
E:294-306
F:294-306
2CLPAB_2PS00871 Chaperonins clpA/B signature 2.CLPB_ECOLI631-649
 
 
 
 
 		  6A:631-649
B:631-649
C:631-649
D:631-649
E:631-649
F:631-649

(-) Exons   (0, 0)

(no "Exon" information available for 4D2Q)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:789
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:856
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                857 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852    | 
           CLPB_ECOLI     3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh.......hhhhhhhhh......hhhhhhhh...hhhhhhhhhhhhhh....-------...hhhhhhhhhhhhhhhhh......hhhhhhhhh...hhhhhhhhhh...hhhhhhhhh.----------------.hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2q A   3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLmSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQV-------QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQ----------------QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQH 858
                                    12        22        32  |     42        52        62        72 |      82        92       102       112       122       132       142         -      |162       172       182       192       202       212       222       232       242  |      -     | 262       272       282|  |     - |   | 302       312       322       332       342       352       362       372       382       392       402|      412       422       ||-       442|      452       462       472       482        |-     | 502       512       522 |     532       542       552       562       572       582       592       602       612       622      |632 |   | 642      |  -      |662       672       682       692       702       712   |   722      |732    |  742       752       762       772       782       792       802       812       822       832       842       852      
                                                           35-MSE                                 74      82                                                         142              159                                                                                242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                         
                                                                                                                                                                                                                                                                            245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 634-MSE                                                                                                737-MSE                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     638-MSE                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:789
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:856
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                857 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852    | 
           CLPB_ECOLI     3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh.......hhhhhhhhh......hhhhhhhh...hhhhhhhhhhhhhh....-------...hhhhhhhhhhhhhhhhh......hhhhhhhhh...hhhhhhhhhh...hhhhhhhhh.----------------.hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2q B   3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLmSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQV-------QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQ----------------QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQH 858
                                    12        22        32  |     42        52        62        72 |      82        92       102       112       122       132       142         -      |162       172       182       192       202       212       222       232       242  |      -     | 262       272       282|  |     - |   | 302       312       322       332       342       352       362       372       382       392       402|      412       422       ||-       442|      452       462       472       482        |-     | 502       512       522 |     532       542       552       562       572       582       592       602       612       622      |632 |   | 642      |  -      |662       672       682       692       702       712   |   722      |732    |  742       752       762       772       782       792       802       812       822       832       842       852      
                                                           35-MSE                                 74      82                                                         142              159                                                                                242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                         
                                                                                                                                                                                                                                                                            245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 634-MSE                                                                                                737-MSE                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     638-MSE                                                                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:789
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:856
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                857 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852    | 
           CLPB_ECOLI     3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh.......hhhhhhhhh......hhhhhhhh...hhhhhhhhhhhhhh....-------...hhhhhhhhhhhhhhhhh......hhhhhhhhh...hhhhhhhhhh...hhhhhhhhh.----------------.hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2q C   3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLmSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQV-------QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQ----------------QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQH 858
                                    12        22        32  |     42        52        62        72 |      82        92       102       112       122       132       142         -      |162       172       182       192       202       212       222       232       242  |      -     | 262       272       282|  |     - |   | 302       312       322       332       342       352       362       372       382       392       402|      412       422       ||-       442|      452       462       472       482        |-     | 502       512       522 |     532       542       552       562       572       582       592       602       612       622      |632 |   | 642      |  -      |662       672       682       692       702       712   |   722      |732    |  742       752       762       772       782       792       802       812       822       832       842       852      
                                                           35-MSE                                 74      82                                                         142              159                                                                                242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                         
                                                                                                                                                                                                                                                                            245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 634-MSE                                                                                                737-MSE                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     638-MSE                                                                                                                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:789
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:856
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                857 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852    | 
           CLPB_ECOLI     3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh.......hhhhhhhhh......hhhhhhhh...hhhhhhhhhhhhhh....-------...hhhhhhhhhhhhhhhhh......hhhhhhhhh...hhhhhhhhhh...hhhhhhhhh.----------------.hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2q D   3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLmSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQV-------QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQ----------------QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQH 858
                                    12        22        32  |     42        52        62        72 |      82        92       102       112       122       132       142         -      |162       172       182       192       202       212       222       232       242  |      -     | 262       272       282|  |     - |   | 302       312       322       332       342       352       362       372       382       392       402|      412       422       ||-       442|      452       462       472       482        |-     | 502       512       522 |     532       542       552       562       572       582       592       602       612       622      |632 |   | 642      |  -      |662       672       682       692       702       712   |   722      |732    |  742       752       762       772       782       792       802       812       822       832       842       852      
                                                           35-MSE                                 74      82                                                         142              159                                                                                242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                         
                                                                                                                                                                                                                                                                            245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 634-MSE                                                                                                737-MSE                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     638-MSE                                                                                                                                                                                                                        


Chain E from PDB  Type:PROTEIN  Length:789
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:856
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                857 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852    | 
           CLPB_ECOLI     3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh.......hhhhhhhhh......hhhhhhhh...hhhhhhhhhhhhhh....-------...hhhhhhhhhhhhhhhhh......hhhhhhhhh...hhhhhhhhhh...hhhhhhhhh.----------------.hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2q E   3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLmSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQV-------QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQ----------------QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQH 858
                                    12        22        32  |     42        52        62        72 |      82        92       102       112       122       132       142         -      |162       172       182       192       202       212       222       232       242  |      -     | 262       272       282|  |     - |   | 302       312       322       332       342       352       362       372       382       392       402|      412       422       ||-       442|      452       462       472       482        |-     | 502       512       522 |     532       542       552       562       572       582       592       602       612       622      |632 |   | 642      |  -      |662       672       682       692       702       712   |   722      |732    |  742       752       762       772       782       792       802       812       822       832       842       852      
                                                           35-MSE                                 74      82                                                         142              159                                                                                242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                         
                                                                                                                                                                                                                                                                            245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 634-MSE                                                                                                737-MSE                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     638-MSE                                                                                                                                                                                                                        


Chain F from PDB  Type:PROTEIN  Length:789
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:856
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                857 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852    | 
           CLPB_ECOLI     3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh.......hhhhhhhhh......hhhhhhhh...hhhhhhhhhhhhhh....-------...hhhhhhhhhhhhhhhhh......hhhhhhhhh...hhhhhhhhhh...hhhhhhhhh.----------------.hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2q F   3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLmSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQV-------QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQ----------------QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQH 858
                                    12        22        32  |     42        52        62        72 |      82        92       102       112       122       132       142         -      |162       172       182       192       202       212       222       232       242  |      -     | 262       272       282|  |     - |   | 302       312       322       332       342       352       362       372       382       392       402|      412       422       ||-       442|      452       462       472       482        |-     | 502       512       522 |     532       542       552       562       572       582       592       602       612       622      |632 |   | 642      |  -      |662       672       682       692       702       712   |   722      |732    |  742       752       762       772       782       792       802       812       822       832       842       852      
                                                           35-MSE                                 74      82                                                         142              159                                                                                242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                         
                                                                                                                                                                                                                                                                            245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 634-MSE                                                                                                737-MSE                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     638-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D2Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D2Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D2Q)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (CLPB_ECOLI | P63284)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0042623    ATPase activity, coupled    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction directly drives some other reaction, for example ion transport across a membrane.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0019538    protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
    GO:0016485    protein processing    Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
    GO:0006986    response to unfolded protein    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Cis Peptide Bonds
    Val A:548 - Ser A:549   [ RasMol ]  
    Val B:548 - Ser B:549   [ RasMol ]  
    Val C:548 - Ser C:549   [ RasMol ]  
    Val D:548 - Ser D:549   [ RasMol ]  
    Val E:548 - Ser E:549   [ RasMol ]  
    Val F:548 - Ser F:549   [ RasMol ]  
 

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  4d2q
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  CLPB_ECOLI | P63284
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPB_ECOLI | P63284: 1jbk 1khy 4ciu 4d2u 4d2x

(-) Related Entries Specified in the PDB File

4d2u NEGATIVE-STAIN ELECTRON MICROSCOPY OF E. COLI CLPB (BAP FORM BOUND TO CLPP)
4d2x NEGATIVE-STAIN ELECTRON MICROSCOPY OF E. COLI CLPB OF Y503D HYPERACTIVE MUTANT (BAP FORM BOUND TO CLPP)